MM-GANN-DDI: Multimodal Graph-Agnostic Neural Networks for Predicting Drug-Drug Interaction Events. - Junning Feng 001; Yong Liang 001; Tianwei Yu (Comput. Biol. Medicine, 2023)

HGCLAMIR: Hypergraph contrastive learning with attention mechanism and integrated multi-view representation for predicting miRNA-disease associations. - Dong Ouyang; Yong Liang 001; Jinfeng Wang; Le Li; Ning Ai; Junning Feng 001; Shanghui Lu; Shuilin Liao; Xiaoying Liu 003; Shengli Xie 001 (PLoS Comput. Biol., 2024)

ADM: adaptive graph diffusion for meta-dimension reduction. - Junning Feng 001; Yong Liang 001; Tianwei Yu (Briefings Bioinform., 2025)

Dissecting genetic regulation of metabolic coordination. - Emily C. Hector; Daiwei Zhang; Leqi Tian; Junning Feng 001; Xianyong Yin; Tianyi Xu; Markku Laakso; Yun Bai; Jiashun Xiao; Jian Kang 003; Tianwei Yu (Briefings Bioinform., 2025)

GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding. - Weicai Long; Yusen Hou; Junning Feng 001; Houcheng Su; Shuo Yang; Donglin Xie; Yanlin Zhang (CoRR, 2026)

PhageBench: Can LLMs Understand Raw Bacteriophage Genomes? - Yusen Hou; Weicai Long; Haitao Hu; Houcheng Su; Junning Feng 001; Yanlin Zhang (CoRR, 2026)