Gene differential expression analysis for leukemia based on relative risk. - Yang Yu; Junpeng Zhang 001; Jianfeng He 001; Lei Ma 010 (BMEI, 2011)

ORPSW: a new classifier for gene expression data based on optimal risk and preventive patterns. - Junpeng Zhang 001; Jianfeng He 001; Lei Ma 010; Jiuyong Li (J. Comput., 2011)

A Study of the Single Point Mutation Loci in the Hepatitis B Virus Sequences via Optimal Risk and Preventive Sets with Weights. - Qi Zhang; Junpeng Zhang 001; Jianmei Gao; Jianfeng He 001; Xinmin Yan; Lei Ma 010; Xianwen Zhang; Jiuyong Li (APWeb, 2012)

Inferring functional miRNA-mRNA regulatory modules in epithelial-mesenchymal transition with a probabilistic topic model. - Junpeng Zhang 001; Bing Liu 002; Jianfeng He 001; Lei Ma 010; Jiuyong Li (Comput. Biol. Medicine, 2012)

Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data. - Junpeng Zhang 001; Thuc Duy Le; Lin Liu 003; Bing Liu 002; Jianfeng He 001; Gregory J. Goodall; Jiuyong Li (Bioinform., 2014)

Identifying direct miRNA-mRNA causal regulatory relationships in heterogeneous data. - Junpeng Zhang 001; Thuc Duy Le; Lin Liu 003; Bing Liu 002; Jianfeng He 001; Gregory J. Goodall; Jiuyong Li (J. Biomed. Informatics, 2014)

From miRNA regulation to miRNA-TF co-regulation: computational approaches and challenges. - Thuc Duy Le; Lin Liu 003; Junpeng Zhang 001; Bing Liu 002; Jiuyong Li (Briefings Bioinform., 2015)

Identifying microRNA targets in epithelial-mesenchymal transition using joint-intervention causal inference. - Thuc Duy Le; Junpeng Zhang 001; Lin Liu 003; Buu Minh Thanh Truong; Shu Hu 001; Taosheng Xu; Jiuyong Li (CSBio, 2017)

Computational methods for identifying miRNA sponge interactions. - Thuc Duy Le; Junpeng Zhang 001; Lin Liu 003; Jiuyong Li (Briefings Bioinform., 2017)

Identifying miRNA sponge modules using biclustering and regulatory scores. - Junpeng Zhang 001; Thuc Duy Le; Lin Liu 003; Jiuyong Li (BMC Bioinform., 2017)

Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer. - Junpeng Zhang 001; Thuc Duy Le; Lin Liu 003; Jiuyong Li (BMC Bioinform., 2017)

LncmiRSRN: identification and analysis of long non-coding RNA related miRNA sponge regulatory network in human cancer. - Junpeng Zhang 001; Lin Liu 003; Jiuyong Li; Thuc Duy Le (Bioinform., 2018)

miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. - Taosheng Xu; Ning Su; Lin Liu 003; Junpeng Zhang 001; Hongqiang Wang; Weijia Zhang 001; Jie Gui; Kui Yu; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2018)

SSEM: A Novel Self-Adaptive Stacking Ensemble Model for Classification. - Weili Jiang; Zhenhua Chen; Yan Xiang; Dangguo Shao; Lei Ma 010; Junpeng Zhang 001 (IEEE Access, 2019)

Inferring and analyzing module-specific lncRNA-mRNA causal regulatory networks in human cancer. - Junpeng Zhang 001; Thuc Duy Le; Lin Liu 003; Jiuyong Li (Briefings Bioinform., 2019)

Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction. - Vu Viet Hoang Pham; Junpeng Zhang 001; Lin Liu 003; Buu Minh Thanh Truong; Taosheng Xu; Trung T. Nguyen; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2019)

miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules. - Junpeng Zhang 001; Lin Liu 003; Taosheng Xu; Yong Xie; Chunwen Zhao; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2019)

Identifying miRNA synergism using multiple-intervention causal inference. - Junpeng Zhang 001; Vu Viet Hoang Pham; Lin Liu 003; Taosheng Xu; Buu Minh Thanh Truong; Jiuyong Li; Nini Rao; Thuc Duy Le (BMC Bioinform., 2019)

MEM: a new mixed ensemble model for identifying frauds. - Zhenhua Chen; Weili Jiang; Lei Ma 010; Junpeng Zhang 001; Jinshan Hu; Yan Xiang; Dangguo Shao (Int. J. Inf. Commun. Technol., 2019)

Prediction of 30-Day Readmission: An Improved Gradient Boosting Decision Tree Approach. - Guodong Du 002; Lei Ma 010; Jinshan Hu; Junpeng Zhang 001; Yan Xiang; Dangguo Shao; Hongbin Wang (J. Medical Imaging Health Informatics, 2019)

Computational Methods for Predicting Autism Spectrum Disorder from Gene Expression Data. - Junpeng Zhang 001; Thin Nguyen; Buu Minh Thanh Truong; Lin Liu 003; Jiuyong Li; Thuc Duy Le (ADMA, 2020)

miRReg: A Framework for Studying miRNA Regulation in Tetralogy of Fallot. - Guangbin Wang; Nini Rao; Junpeng Zhang 001; Wei Zeng; Fengbiao Guo; Ke Liu (IEEE Access, 2020)

Correction to: Identifying miRNA synergism using multiple-intervention causal inference. - Junpeng Zhang 001; Vu Viet Hoang Pham; Lin Liu 003; Taosheng Xu; Buu Minh Thanh Truong; Jiuyong Li; Nini Rao; Thuc Duy Le (BMC Bioinform., 2020)

LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer. - Junpeng Zhang 001; Taosheng Xu; Lin Liu 003; Wu Zhang; Chunwen Zhao; Sijing Li; Jiuyong Li; Nini Rao; Thuc Duy Le (PLoS Comput. Biol., 2020)

Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data. - Junpeng Zhang 001; Lin Liu 003; Taosheng Xu; Wu Zhang; Chunwen Zhao; Sijing Li; Jiuyong Li; Nini Rao; Thuc Duy Le (BMC Bioinform., 2021)

KSCB: a novel unsupervised method for text sentiment analysis. - Weili Jiang; Kangneng Zhou; Chenchen Xiong; Guodong Du 002; Chubin Ou; Junpeng Zhang 001 (Appl. Intell., 2023)

Pan-cancer characterization of ncRNA synergistic competition uncovers potential carcinogenic biomarkers. - Junpeng Zhang 001; Lin Liu 003; Xuemei Wei; Chunwen Zhao; Sijing Li; Jiuyong Li; Thuc Duy Le (PLoS Comput. Biol., 2023)

Modelling cell type-specific lncRNA regulatory network in autism with Cycle. - Chenchen Xiong; Mingfang Zhang 005; Haolin Yang; Xuemei Wei; Chunwen Zhao; Junpeng Zhang 001 (BMC Bioinform., 2024)