NdPASA: a pairwise sequence alignment server for distantly related proteins. - Wei Li; Junwen Wang; Jin-An Feng (Bioinform., 2005)

Generalizations of Markov model to characterize biological sequences. - Junwen Wang; Sridhar Hannenhalli (BMC Bioinform., 2005)

3D Reconstruction Based on Pseudo-Linearization and Errors-in-Variables Model. - Tingbo Hou; Junwen Wang; Feng Zhu 014; Zelin Shi (ICAT Workshops, 2006)

Quality analysis in flexible manufacturing systems with batch productions. - Junwen Wang; Jingshan Li; Jorge Arinez 001; Stephan Biller; Ningjian Huang (CASE, 2008)

Monotonic and non-monotonic properties of product quality in flexible manufacturing systems with batch operations. - Junwen Wang; Jingshan Li; Jorge Arinez 001; Stephan Biller; Ningjian Huang (CASE, 2009)

Transient analysis of dairy filling and packing production lines. - Junwen Wang; Yao Hu; Jingshan Li (ACC, 2010)

Improving quality in flexible manufacturing systems: A bottleneck transition approach. - Junwen Wang; Jingshan Li; Jorge Arinez 001; Stephan Biller (CASE, 2010)

Quality bottleneck transitions in flexible manufacturing systems. - Junwen Wang; Jingshan Li; Jorge Arinez 001; Stephan Biller (ICRA, 2010)

FastPval: a fast and memory efficient program to calculate very low P-values from empirical distribution. - Mulin Jun Li; Pak Chung Sham; Junwen Wang (Bioinform., 2010)

Product Sequencing With Respect to Quality in Flexible Manufacturing Systems With Batch Operations. - Junwen Wang; Jingshan Li; Jorge Arinez 001; Stephan Biller (IEEE Trans Autom. Sci. Eng., 2010)

Quality Analysis in Flexible Manufacturing Systems With Batch Productions: Performance Evaluation and Nonmonotonic Properties. - Junwen Wang; Jingshan Li; Jorge Arinez 001; Stephan Biller; Ningjian Huang (IEEE Trans Autom. Sci. Eng., 2010)

Virtual battery: A simulation framework for batteries in electric vehicles. - Feng Ju; Junwen Wang; Jingshan Li; Stephan Biller; Guoxian Xiao (CASE, 2011)

Modeling and analysis of care delivery services within patient rooms. - Junwen Wang; Jingshan Li; Patricia K. Howard (CASE, 2011)

Correlated evolution of transcription factors and their binding sites. - Shu Yang 009; Hari Krishna Yalamanchili; Xinran Li; Kwok-Ming Yao; Pak Chung Sham; Michael Q. Zhang; Junwen Wang (Bioinform., 2011)

A passive image authentication scheme for detecting region-duplication forgery with rotation. - Guangjie Liu 001; Junwen Wang; Shiguo Lian; Zhiquan Wang (J. Netw. Comput. Appl., 2011)

ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor. - Jing Qin 004; Mulin Jun Li; Panwen Wang; Michael Q. Zhang; Junwen Wang (Nucleic Acids Res., 2011)

A novel neural response algorithm for protein function prediction. - Hari Krishna Yalamanchili; Quan-Wu Xiao; Junwen Wang (BMC Syst. Biol., 2012)

GWASdb: a database for human genetic variants identified by genome-wide association studies. - Mulin Jun Li; Panwen Wang; Xiaorong Liu; Ee Lyn Lim; Zhangyong Wang; Meredith Yeager; Maria P. Wong; Pak Chung Sham; Stephen J. Chanock; Junwen Wang (Nucleic Acids Res., 2012)

Reducing Length of Stay in Emergency Department: A Simulation Study at a Community Hospital. - Junwen Wang; Jingshan Li; Kathy Tussey; Kay Ross (IEEE Trans. Syst. Man Cybern. Part A, 2012)

Detect image splicing with artificial blurred boundary. - Guangjie Liu 001; Junwen Wang; Shiguo Lian; Yuewei Dai (Math. Comput. Model., 2013)

GWAS3D: detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications. - Mulin Jun Li; Lily Yan Wang; Zhengyuan Xia; Pak Chung Sham; Junwen Wang (Nucleic Acids Res., 2013)

Virtual Battery: A Battery Simulation Framework for Electric Vehicles. - Feng Ju; Junwen Wang; Jingshan Li; Guoxian Xiao; Stephan Biller (IEEE Trans Autom. Sci. Eng., 2013)

Regularity of herbal formulae for HIV/AIDS patients with syndromes based on complex networks. - Jian Wang; Xiaoping Zhang; Biyan Liang; Xuezhong Zhou; Jiaming Lu; Liran Xu; Xin Deng; Xiuhui Li; Li Wang; Xinghua Tan; Yuxiang Mao; Guoliang Zhang; et al. (CIBD, 2014)

Mining the prescription-symptom regularity of TCM for HIV/AIDS based on complex network. - Xiaoping Zhang; Jian Wang; Biyan Liang; Haixun Qi; Yufeng Zhao; Jaming Lu; Liran Xu; Xin Deng; Xiuhui Li; Li Wang; Xinghua Tan; Yuxiang Mao; et al. (CIBD, 2014)

CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data. - Daogang Guan; Jiaofang Shao; Youping Deng; Panwen Wang; Zhongying Zhao 002; Yan Liang; Junwen Wang; Bin Yan (Bioinform., 2014)

FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data. - Weixin Wang 004; Panwen Wang; Feng Xu; Ruibang Luo; Maria P. Wong; Tak Wah Lam; Junwen Wang (Bioinform., 2014)

DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment. - Hari Krishna Yalamanchili; Bin Yan; Mulin Jun Li; Jing Qin 004; Zhongying Zhao 002; Francis Y. L. Chin; Junwen Wang (Bioinform., 2014)

PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data. - Daogang Guan; Jiaofang Shao; Zhongying Zhao 002; Panwen Wang; Jing Qin 004; Youping Deng; Kenneth R. Boheler; Junwen Wang; Bin Yan (Nucleic Acids Res., 2014)

dbPSHP: a database of recent positive selection across human populations. - Mulin Jun Li; Lily Yan Wang; Zhengyuan Xia; Maria P. Wong; Pak Chung Sham; Junwen Wang (Nucleic Acids Res., 2014)

Modeling and Analysis of Care Delivery Services Within Patient Rooms: A System-Theoretic Approach. - Junwen Wang; Xiang Zhong; Jingshan Li; Patricia Kunz Howard (IEEE Trans Autom. Sci. Eng., 2014)

The Current Status and Challenges in Computational Analysis of Genomic Big Data. - Yiming Qin; Hari Krishna Yalamanchili; Jing Qin 004; Bin Yan; Junwen Wang (Big Data Res., 2015)

Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression. - Mulin Jun Li; Bin Yan; Pak Chung Sham; Junwen Wang (Briefings Bioinform., 2015)

ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks. - Panwen Wang; Jing Qin 004; Yiming Qin; Yun Zhu; Lily Yan Wang; Mulin Jun Li; Michael Q. Zhang; Junwen Wang (Nucleic Acids Res., 2015)

Predicting regulatory variants with composite statistic. - Mulin Jun Li; Zhicheng Pan; Zipeng Liu; Jiexing Wu; Panwen Wang; Yun Zhu; Feng Xu; Zhengyuan Xia; Pak Chung Sham; Jean-Pierre A. Kocher; Miao-Xin Li; Jun S. Liu; et al. (Bioinform., 2016)

GWASdb v2: an update database for human genetic variants identified by genome-wide association studies. - Mulin Jun Li; Zipeng Liu; Panwen Wang; Maria P. Wong; Matthew R. Nelson; Jean-Pierre A. Kocher; Meredith Yeager; Pak Chung Sham; Stephen J. Chanock; Zhengyuan Xia; Junwen Wang (Nucleic Acids Res., 2016)

Applications of integrative OMICs approaches to gene regulation studies. - Jing Qin 004; Bin Yan; Yaohua Hu; Panwen Wang; Junwen Wang (Quant. Biol., 2016)

A four-point measurement model for evaluating the pose of industrial robot and its influence factor analysis. - Chuangui Yang; Junwen Wang; Liang Mi; Xingbao Liu; Yangqiu Xia; Yilei Li; Shaoxing Ma; Qiang Teng (Ind. Robot, 2017)

mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers. - Mulin Jun Li; Hongcheng Yao; Dandan Huang; Huanhuan Liu; Zipeng Liu; Hang Xu; Yiming Qin; Jeanette Prinz; Weiyi Xia; Panwen Wang; Bin Yan; Nhan L. Tran; et al. (Nucleic Acids Res., 2017)

Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolution. - Shu Yang 009; Junwen Wang; Raymond T. Ng (BMC Bioinform., 2018)

Uncertainty analysis and evaluation of measurement of the positioning repeatability for industrial robots. - Chuangui Yang; Xingbao Liu; Yue Xiaobin; Liang Mi; Junwen Wang; Yangqiu Xia; Hailian Yu; Chen Heng (Ind. Robot, 2018)

GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits. - Dandan Huang; Xianfu Yi; Shijie Zhang; Zhanye Zheng; Panwen Wang; Chenghao Xuan; Pak Chung Sham; Junwen Wang; Mulin Jun Li (Nucleic Acids Res., 2018)

Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data. - Shun H. Yip; Pak Chung Sham; Junwen Wang (Briefings Bioinform., 2019)

MetaMarker: a pipeline for de novo discovery of novel metagenomic biomarkers. - Mohamad Koohi-Moghadam; Mitesh J. Borad; Nhan L. Tran; Kristin R. Swanson; Lisa Boardman; Hong-Zhe Su; Junwen Wang (Bioinform., 2019)

Predicting disease-associated mutation of metal-binding sites in proteins using a deep learning approach. - Mohamad Koohi-Moghadam; Haibo Wang; Yuchuan Wang; Xinming Yang; Hongyan Li; Junwen Wang; Hongzhe Sun (Nat. Mach. Intell., 2019)

Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads. - Ye Wu 007; Ruibang Luo; Tak Wah Lam; Hing-Fung Ting; Junwen Wang (BCB, 2020)

Methods and resources to access mutation-dependent effects on cancer drug treatment. - Hongcheng Yao; Qian Liang; Xinyi Qian; Junwen Wang; Pak Chung Sham; Mulin Jun Li (Briefings Bioinform., 2020)

Somatic selection distinguishes oncogenes and tumor suppressor genes. - Pramod Chandrashekar; Navid Ahmadinejad; Junwen Wang; Aleksandar Sekulic; Jan B. Egan; Yan W. Asmann; Sudhir Kumar 001; Carlo Maley; Li Liu 035 (Bioinform., 2020)

A Comprehensive Review on the Runtime of NVidia Deep Learning Accelerator. - Xu Lyu; Weigong Zhang; Junwen Wang (ICACS, 2021)

Cell fate conversion prediction by group sparse optimization method utilizing single-cell and bulk OMICs data. - Jing Qin 004; Yaohua Hu; Jen-Chih Yao; Ricky Wai Tak Leung; Yongqiang Zhou; Yiming Qin; Junwen Wang (Briefings Bioinform., 2021)

CONST: Exploiting Spatial-Temporal Correlation for Multi-Gateway based Reliable LoRa Reception. - Zeyu Zhang; Weiwei Chen 004; Junwen Wang; Shuai Wang 008; Tian He 001 (ICNP, 2022)

Investigating the Effect of Tau Deposition and Apoe on Hippocampal Morphometry in Alzheimer's Disease: A Federated Chow Test Model. - Jianfeng Wu; Yi Su 004; Eric M. Reiman; Richard J. Caselli; Kewei Chen 001; Paul M. Thompson; Junwen Wang; Yalin Wang 001 (ISBI, 2022)

Deep Cascade Learning for Optimal Medical Image Feature Representation. - Junwen Wang; Xin Du; Katayoun Farrahi; Mahesan Niranjan (MLHC, 2022)

SBDF-Net: A versatile dual-branch fusion network for medical image segmentation. - Junwen Wang; Shengwei Tian; Long Yu 001; Yongtao Wang; Fan Wang 005; Zhicheng Zhou (Biomed. Signal Process. Control., 2022)

Local-global multiple perception based deep multi-modality learning for sub-type of esophageal cancer classification. - Zhicheng Zhou; Long Yu 001; Shengwei Tian; Yan Xing 004; Meng Liu; Guangli Xiao; Junwen Wang; Fan Wang 005 (Biomed. Signal Process. Control., 2022)

Aluminum Defect Detection Based on Weighted Feature Fusion Mechanism. - Tingting Sui; Junwen Wang; Yujie Wang; Junjie Yang; Zihan Xu; Yiwen Zou; Yikai Zhong (6GN (1), 2023)

MS TextSpotter: An Intelligent Instance Segmentation Scheme for Semantic Scene Text Recognition in Asian Social Networks. - Yikai Zhong; Heng Zhang 002; Yanli Liu 005; Qiang Qian; Junwen Wang (6GN (1), 2023)

Predictive Analysis of NBA Game Outcomes through Machine Learning. - Junwen Wang (MLMI, 2023)

PDDD-Net: Defect Detection Network Based on Parallel Attention Mechanism and Dual-Channel Spatial Pyramid Pooling. - Tingting Sui; Junwen Wang (IEEE Access, 2023)

A Surface-Based Federated Chow Test Model for Integrating APOE Status, Tau Deposition Measure, and Hippocampal Surface Morphometry. - Jianfeng Wu; Yi Su 004; Yanxi Chen 002; Wenhui Zhu; Eric M. Reiman; Richard J. Caselli; Kewei Chen 001; Paul M. Thompson; Junwen Wang; Yalin Wang 001 (CoRR, 2023)

Cascade Learning Localises Discriminant Features in Visual Scene Classification. - Junwen Wang; Katayoun Farrahi (CoRR, 2023)

RFIA-Net: Rich CNN-transformer network based on asymmetric fusion feature aggregation to classify stage I multimodality oesophageal cancer images. - Zhicheng Zhou; Gang Sun; Long Yu 001; Shengwei Tian; Guangli Xiao; Junwen Wang; Shaofeng Zhou (Eng. Appl. Artif. Intell., 2023)

TEDT: Transformer-Based Encoding-Decoding Translation Network for Multimodal Sentiment Analysis. - Fan Wang 005; Shengwei Tian; Long Yu 001; Jing Liu 001; Junwen Wang; Kun Li; Yongtao Wang (Cogn. Comput., 2023)

An angular shrinkage BERT model for few-shot relation extraction with none-of-the-above detection. - Junwen Wang; Yongbin Gao; Zhijun Fang (Pattern Recognit. Lett., 2023)

FixMatch-LS: Semi-supervised skin lesion classification with label smoothing. - Shaofeng Zhou; Shenwei Tian; Long Yu 001; Weidong Wu; Dezhi Zhang; Zhen Peng; Zhicheng Zhou; Junwen Wang (Biomed. Signal Process. Control., 2023)

HIGF-Net: Hierarchical information-guided fusion network for polyp segmentation based on transformer and convolution feature learning. - Junwen Wang; Shengwei Tian; Long Yu 001; Zhicheng Zhou; Fan Wang 005; Yongtao Wang (Comput. Biol. Medicine, 2023)

MFUnetr: A transformer-based multi-task learning network for multi-organ segmentation from partially labeled datasets. - Qin Hao; Shengwei Tian; Long Yu 001; Junwen Wang (Biomed. Signal Process. Control., 2023)

Inferring CTCF-binding patterns and anchored loops across human tissues and cell types. - Hang Xu; Xianfu Yi; Xutong Fan; Chengyue Wu; Wei Wang; Xinlei Chu; Shijie Zhang; Xiaobao Dong; Zhao Wang; Jianhua Wang; Yao Zhou; Ke Zhao; et al. (Patterns, 2023)

The prognostic value and immune landscaps of m6A/m5C-related lncRNAs signature in the low grade glioma. - Ran Li; Haiyan Chen; Chaoxi Li; Yiwei Qi; Kai Zhao; Junwen Wang; Chao You; Haohao Huang (BMC Bioinform., 2023)

An Improved Multiscale Semantic Enhancement Network for Aluminum Defect Detection. - Tingting Sui; Junwen Wang (IEEE Access, 2024)

MultiSC: a deep learning pipeline for analyzing multiomics single-cell data. - Xiang Lin; Siqi Jiang; Le Gao; Zhi Wei 001; Junwen Wang (Briefings Bioinform., 2024)

A self-attention-driven deep learning framework for inference of transcriptional gene regulatory networks. - Yong Liu; Le Zhong; Bin Yan; Zhuobin Chen; Yanjia Yu; Dan Yu; Jing Qin 004; Junwen Wang (Briefings Bioinform., 2024)

Scribble-Based Interactive Segmentation of Medical Hyperspectral Images. - Zhonghao Wang; Junwen Wang; Charlie Budd; Oscar MacCormac; Jonathan Shapey; Tom Vercauteren (CoRR, 2024)

OOD-SEG: Out-Of-Distribution detection for image SEGmentation with sparse multi-class positive-only annotations. - Junwen Wang; Zhonghao Wang; Oscar MacCormac; Jonathan Shapey; Tom Vercauteren (CoRR, 2024)

Graph-RPI: predicting RNA-protein interactions via graph autoencoder and self-supervised learning strategies. - Jiahui Guan; Lantian Yao; Peilin Xie; Zhihao Zhao; Dian Meng; Tzong-Yi Lee; Junwen Wang; Ying-Chih Chiang (Briefings Bioinform., 2025)

CapUBS: Capsule Network-Based Band Selection for Underwater Hyperspectral Imagery. - Qi Li; Junwen Wang; Xingyuan Zu; Dan Chen; Ke Zhang; Jinghua Li (IEEE Trans. Geosci. Remote. Sens., 2025)

DMPDD-Net: An Effective Defect Detection Method for Aluminum Profiles Surface Defect. - Tingting Sui; Junwen Wang (IEEE Trans. Instrum. Meas., 2025)

Tree-based Semantic Losses: Application to Sparsely-supervised Large Multi-class Hyperspectral Segmentation. - Junwen Wang; Oscar MacCormac; William Rochford; Aaron Kujawa; Jonathan Shapey; Tom Vercauteren (CoRR, 2025)

Label tree semantic losses for rich multi-class medical image segmentation. - Junwen Wang; Oscar MacCormac; William Rochford; Aaron Kujawa; Jonathan Shapey; Tom Vercauteren (CoRR, 2025)