Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem. - Junyan Dai; Tobias Rubel; Yunheng Han; Erin K. Molloy (WABI, 2023)

Multi-stream signals separation based on space-time-isomeric (SPATIO) array using metasurface antennas. - Yangming Lou; Liang Jin; Huiming Wang; Zhou Zhong; Junyan Dai (Sci. China Inf. Sci., 2024)

Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem. - Junyan Dai; Tobias Rubel; Yunheng Han; Erin K. Molloy (Algorithms Mol. Biol., 2024)

Dynamic Programming Algorithms for Fast and Accurate Cell Lineage Tree Reconstruction from CRISPR-Based Lineage Tracing Data. - Junyan Dai; Erin K. Molloy (RECOMB, 2025)

A spatial-temporal neural network based on ResNet-Transformer for predicting railroad broken rails. - Xin Wang; Junyan Dai; Xiang Liu (Adv. Eng. Informatics, 2025)