methylDMV: Simultaneous Detection of Differential DNA Methylation and Variability with Confounder Adjustment. - Pei Fen Kuan; Junyan Song; Shuyao He (PSB, 2017)

Fitness Landscape Analysis: From Problem Understanding to Design of Evolutionary Algorithms. - Xinyu Zhou 002; Junyan Song; Shuixiu Wu; Wenlong Ni; Mingwen Wang 001 (BIC-TA (1), 2021)

Optimal scheme for dynamic adjustment of active mirror in FAST system. - Hongchuan Zhou; Jiaqi Liu; Junyan Song; Benchao Yang (CSAI, 2021)

A systematic assessment of cell type deconvolution algorithms for DNA methylation data. - Junyan Song; Pei Fen Kuan (Briefings Bioinform., 2022)

Artificial bee colony algorithm based on online fitness landscape analysis. - Xinyu Zhou 002; Junyan Song; Shuixiu Wu; Mingwen Wang 001 (Inf. Sci., 2023)