A Nonhomogeneous Hidden Markov Model for Gene Mapping Based on Next-Generation Sequencing Data. - Fatemeh Zamanzad Ghavidel; Jürgen Claesen; Tomasz Burzykowski (J. Comput. Biol., 2015)

A Multivariate Negative-Binomial Model with Random Effects for Differential Gene-Expression Analysis of Correlated mRNA Sequencing Data. - Denis Kazakiewicz; Jürgen Claesen; Katarzyna Górczak; Dariusz Plewczynski; Tomasz Burzykowski (J. Comput. Biol., 2019)

A Conceptual Framework for Abundance Estimation of Genomic Targets in the Presence of Ambiguous Short Sequencing Reads. - Katarzyna Górczak; Jürgen Claesen; Tomasz Burzykowski (J. Comput. Biol., 2020)

Deuteros 2.0: peptide-level significance testing of data from hydrogen deuterium exchange mass spectrometry. - Andy M. C. Lau; Jürgen Claesen; Kjetil Hansen; Argyris Politis (Bioinform., 2021)

A varying-coefficient model for the analysis of methylation sequencing data. - Katarzyna Górczak; Tomasz Burzykowski; Jürgen Claesen (Comput. Biol. Chem., 2024)