EndoNet: an information resource about endocrine networks. - Anatolij Potapov; Ines Liebich; Jürgen Dönitz; Knut Schwarzer; Nicole Sasse; Torsten Schoeps; Torsten Crass; Edgar Wingender (Nucleic Acids Res., 2006)

DEEP - A tool for differential expression effector prediction. - Jost Degenhardt; Martin Haubrock; Jürgen Dönitz; Edgar Wingender; Torsten Crass (Nucleic Acids Res., 2007)

EndoNet: an information resource about regulatory networks of cell-to-cell communication. - Jürgen Dönitz; Björn Goemann; Muriel Lizé; Holger Michael; Nicole Sasse; Edgar Wingender; Anatolij Potapov (Nucleic Acids Res., 2008)

TFClass: an expandable hierarchical classification of human transcription factors. - Edgar Wingender; Torsten Schoeps; Jürgen Dönitz (Nucleic Acids Res., 2013)

EndoNet: an information resource about the intercellular signaling network. - Jürgen Dönitz; Edgar Wingender (BMC Syst. Biol., 2014)

iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum. - Jürgen Dönitz; Christian Schmitt-Engel; Daniela Grossmann; Lizzy Gerischer; Maike Tech; Michael Schoppmeier; Martin Klingler; Gregor Bucher (Nucleic Acids Res., 2015)

TFClass: a classification of human transcription factors and their rodent orthologs. - Edgar Wingender; Torsten Schoeps; Martin Haubrock; Jürgen Dönitz (Nucleic Acids Res., 2015)

Expanded and updated data and a query pipeline for iBeetle-Base. - Jürgen Dönitz; Lizzy Gerischer; Stefan Hahnke; Stefan Pfeiffer 003; Gregor Bucher (Nucleic Acids Res., 2018)

TFClass: expanding the classification of human transcription factors to their mammalian orthologs. - Edgar Wingender; Torsten Schoeps; Martin Haubrock; Mathias Krull; Jürgen Dönitz (Nucleic Acids Res., 2018)

Predicting the Effect of Variants of Unknown Significance in Molecular Tumor Boards with the VUS-Predict Pipeline. - Vanessa Schlotzig; Kevin Kornrumpf; Alexander König; Tim Tucholski; Jonas Hügel; Tobias R. Overbeck; Tim Beißbarth; Raphael Koch; Jürgen Dönitz (GMDS, 2021)

Identifying Actionable Variants in Cancer - The Dual Web and Batch Processing Tool MTB-Report. - Nadine S. Kurz; Júlia Perera-Bel; Charlotte Höltermann; Tim Tucholski; Jingyu Yang; Tim Beißbarth; Jürgen Dönitz (GMDS, 2022)

Onkopipe: A Snakemake Based DNA-Sequencing Pipeline for Clinical Variant Analysis in Precision Medicine. - Jingyu Yang; Tim Beißbarth; Jürgen Dönitz (GMDS, 2023)

Expectation of clinical decision support systems: a survey study among nephrologist end-users. - Fruzsina Kotsis; Helena Bächle; Michael Altenbuchinger; Jürgen Dönitz; Yacoub Abelard Njipouombe Nsangou; Heike Meiselbach; Robin Kosch; Sabine Salloch; Tanja Bratan; Helena U. Zacharias; Ulla T. Schultheiss (BMC Medical Informatics Decis. Mak., 2023)