Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger. - Bastiaan A. van den Berg; Jurgen F. Nijkamp; Marcel J. T. Reinders; Liang Wu; Herman J. Pel; Johannes A. Roubos; Dick de Ridder (PRIB, 2010)

Integrating genome assemblies with MAIA. - Jurgen F. Nijkamp; Wynand Winterbach; Marcel van den Broek; Jean-Marc Daran; Marcel J. T. Reinders; Dick de Ridder (Bioinform., 2010)

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies. - Alexey A. Gritsenko; Jurgen F. Nijkamp; Marcel J. T. Reinders; Dick de Ridder (Bioinform., 2012)

De novo detection of copy number variation by co-assembly. - Jurgen F. Nijkamp; Marcel van den Broek; Jan-Maarten A. Geertman; Marcel J. T. Reinders; Jean-Marc Daran; Dick de Ridder (Bioinform., 2012)

Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. - Jurgen F. Nijkamp; Mihai Pop; Marcel J. T. Reinders; Dick de Ridder (Bioinform., 2013)