3D Statistical Shape Models to Embed Spatial Relationship Information. - Jurgen Fripp; Pierrick Bourgeat; Andrea J. U. Mewes; Simon K. Warfield; Stuart Crozier; Sébastien Ourselin (CVBIA, 2005)

Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. - Jurgen Fripp; Stuart Crozier; Simon K. Warfield; Sébastien Ourselin (DICTA, 2005)

The Use of Unwrapped Phase in MR Image Segmentation: A Preliminary Study. - Pierrick Bourgeat; Jurgen Fripp; Andrew L. Janke; Graham J. Galloway; Stuart Crozier; Sébastien Ourselin (MICCAI (2), 2005)

Automatic Segmentation of the Knee Bones using 3D Active Shape Models. - Jurgen Fripp; Simon K. Warfield; Stuart Crozier; Sébastien Ourselin (ICPR (1), 2006)

MR Image Segmentation Using Phase Information and a Novel Multiscale Scheme. - Pierrick Bourgeat; Jurgen Fripp; Peter Stanwell; Saadallah Ramadan; Sébastien Ourselin (MICCAI (2), 2006)

A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages. - Jurgen Fripp; Stuart Crozier; Simon K. Warfield; Sébastien Ourselin (Image-Guided Procedures, 2006)

Automatic Segmentation of the Bones from Mr Images of The Knee. - Jurgen Fripp; Sébastien Ourselin; Simon K. Warfield; Stuart Crozier (ISBI, 2007)

Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. - Jurgen Fripp; Stuart Crozier; Simon K. Warfield; Sébastien Ourselin (MICCAI (2), 2007)

Shape based segmentation of MRIs of the bones in the knee using phase and intensity information. - Jurgen Fripp; Pierrick Bourgeat; Stuart Crozier; Sébastien Ourselin (Image Processing, 2007)

MR image segmentation of the knee bone using phase information. - Pierrick Bourgeat; Jurgen Fripp; Peter Stanwell; Saadallah Ramadan; Sébastien Ourselin (Medical Image Anal., 2007)

Improved cortical thickness measurement from MR images using partial volume estimation. - Pierrick Bourgeat; Oscar Acosta; Maria A. Zuluaga; Jurgen Fripp; Olivier Salvado; Sébastien Ourselin (ISBI, 2008)

Estimation of shape model parameters for 3D surfaces. - Søren G. H. Erbou; Sune Darkner; Jurgen Fripp; Sébastien Ourselin; Bjarne K. Ersbøll (ISBI, 2008)

Generative atlases and atlas selection for C11-PIB PET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients. - Jurgen Fripp; Pierrick Bourgeat; Oscar Acosta; Gareth Jones 002; Victor Villemagne; Sébastien Ourselin; Christopher Rowe; Olivier Salvado (ISBI, 2008)

Atlas based automated segmentation of the quadratus lumborum muscle using non-rigid registration on magnetic resonance images of the thoracolumbar region. - Valer Jurcak; Jurgen Fripp; Craig Engstrom; Duncan Walker; Olivier Salvado; Sébastien Ourselin; Stuart Crozier (ISBI, 2008)

Automatic Delineation of Sulci and Improved Partial Volume Classification for Accurate 3D Voxel-Based Cortical Thickness Estimation from MR. - Oscar Acosta; Pierrick Bourgeat; Jurgen Fripp; Erik Bonner; Sébastien Ourselin; Olivier Salvado (MICCAI (1), 2008)

MR-Less High Dimensional Spatial Normalization of 11C PiB PET Images on a Population of Elderly, Mild Cognitive Impaired and Alzheimer Disease Patients. - Jurgen Fripp; Pierrick Bourgeat; Parnesh Raniga; Oscar Acosta; Victor Villemagne; Gareth Jones 002; Graeme O'Keefe; Christopher Rowe; Sébastien Ourselin; Olivier Salvado (MICCAI (1), 2008)

Appearance modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging. - Jurgen Fripp; Pierrick Bourgeat; Oscar Acosta; Parnesh Raniga; Marc Modat; Kerryn E. Pike; Gareth Jones 002; Graeme O'Keefe; Colin L. Masters; David Ames; Kathryn A. Ellis; Paul Maruff; et al. (NeuroImage, 2008)

Automatic segmentation and analysis of Magnetic Resonance images of the knee bones and cartilages - Jurgen Fripp (2008)

A Quantitative Comparison of Three Methods for Inflating Cortical Meshes. - Erik Bonner; Oscar Acosta; Jurgen Fripp; Olivier Salvado (ISBI, 2009)

Automated Segmentation of the Menisci from MR Images. - Jurgen Fripp; Pierrick Bourgeat; Craig Engstrom; Sébastien Ourselin; Stuart Crozier; Olivier Salvado (ISBI, 2009)

Partial Volume Estimation of Brain Cortex from MRI Using Topology-Corrected Segmentation. - Andrea Rueda; Oscar Acosta; Pierrick Bourgeat; Jurgen Fripp; Erik Bonner; Nicholas D. H. Dowson; Michel Couprie; Eduardo Romero 001; Olivier Salvado (ISBI, 2009)

Nonrigid correction of interleaving artefacts in pelvic MRI. - Jason Dowling; Pierrick Bourgeat; David Raffelt; Jurgen Fripp; Peter B. Greer; Jacqueline Patterson; James Denham; Sanjiv Gupta; Colin Tang; Peter Stanwell; Sébastien Ourselin; Olivier Salvado (Image Processing, 2009)

Non-rigid registration of small animal skeletons from micro-CT using 3D shape context. - Di Xiao; Pierrick Bourgeat; Jurgen Fripp; Oscar Acosta Tamayo; Marie Claude Grégoire; Olivier Salvado (Image Processing, 2009)

Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. - Oscar Acosta; Pierrick Bourgeat; Maria A. Zuluaga; Jurgen Fripp; Olivier Salvado; Sébastien Ourselin (Medical Image Anal., 2009)

MILXView: A Medical Imaging, Analysis and Visualization Platform. - Neil Burdett; Jurgen Fripp; Pierrick Bourgeat; Olivier Salvado (E-HEALTH, 2010)

3D shape context surface registration for cortical mapping. - Oscar Acosta; Jurgen Fripp; Andrea Rueda; Di Xiao; Erik Bonner; Pierrick Bourgeat; Olivier Salvado (ISBI, 2010)

Supervised method to build an atlas database for multi-atlas segmentation-propagation. - Kai-Kai Shen; Pierrick Bourgeat; Jurgen Fripp; Fabrice Mériaudeau; David Ames; Kathryn A. Ellis; Colin L. Masters; Victor L. Villemagne; Christopher C. Rowe; Olivier Salvado (Computer-Aided Diagnosis, 2010)

Automatic MRI Atlas-Based External Beam Radiation Therapy Treatment Planning for Prostate Cancer. - Jason Dowling; Jonathan Lambert 001; Joel Parker; Peter B. Greer; Jurgen Fripp; James Denham; Sébastien Ourselin; Olivier Salvado (Prostate Cancer Imaging, 2010)

Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer's Disease Using Hippocampal Atrophy Rate and Statistical Shape Models. - Kelvin K. Leung; Kai-Kai Shen; Josephine Barnes; Gerard R. Ridgway; Matthew J. Clarkson; Jurgen Fripp; Olivier Salvado; Fabrice Mériaudeau; Nick C. Fox; Pierrick Bourgeat (MICCAI (2), 2010)

Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee. - Jurgen Fripp; Stuart Crozier; Simon K. Warfield; Sébastien Ourselin (IEEE Trans. Medical Imaging, 2010)

Automatic Segmentation of the Prostate in 3D Magnetic Resonance Images Using Case Specific Deformable Models. - Shekhar Chandra; Jason Dowling; Kai-Kai Shen; Josien P. W. Pluim; Peter B. Greer; Olivier Salvado; Jurgen Fripp (DICTA, 2011)

Surface-Base Approach Using a Multi-scale EM-ICP Registration for Statistical Population Analysis. - Vincent Doré; Jurgen Fripp; Pierrick Bourgeat; Kai-Kai Shen; Olivier Salvado; Oscar Acosta (DICTA, 2011)

Automated 3D Segmentation of Vertebral Bodies and Intervertebral Discs from MRI. - Ales Neubert; Jurgen Fripp; Kai-Kai Shen; Olivier Salvado; Raphael Schwarz; Lars Lauer; Craig Engstrom; Stuart Crozier (DICTA, 2011)

Automated 3D Segmentation and Analysis of Cotton Plants. - Anthony Paproki; Jurgen Fripp; Olivier Salvado; Xavier Sirault; Scott Berry; Robert Furbank (DICTA, 2011)

Automated MR Hip Bone Segmentation. - Ying Xia; Shakes Chandra; Olivier Salvado; Jurgen Fripp; Raphael Schwarz; Lars Lauer; Craig Engstrom; Stuart Crozier (DICTA, 2011)

Local intensity model: An outlier detection framework with applications to white matter hyperintensity segmentation. - Parnesh Raniga; Pierre Schmitt; Pierrick Bourgeat; Jurgen Fripp; Victor Villemagne; Christopher Rowe; Olivier Salvado (ISBI, 2011)

Fast Automatic Multi-atlas Segmentation of the Prostate from 3D MR Images. - Jason Dowling; Jurgen Fripp; Shekhar Chandra; Josien P. W. Pluim; Jonathan Lambert 001; Joel Parker; James Denham; Peter B. Greer; Olivier Salvado (Prostate Cancer Imaging, 2011)

Detecting hippocampal shape changes in Alzheimer's disease using statistical shape models. - Kai-Kai Shen; Pierrick Bourgeat; Jurgen Fripp; Fabrice Mériaudeau; Olivier Salvado (Image Processing, 2011)

Symmetric diffeomorphic registration of fibre orientation distributions. - David Raffelt; Jacques-Donald Tournier; Jurgen Fripp; Stuart Crozier; Alan Connelly; Olivier Salvado (NeuroImage, 2011)

Morphology-Based Interslice Interpolation on Manual Segmentations of Joint Bones and Muscles in MRI. - Zhengyi Yang 004; Stuart Crozier; Craig Engstrom; Raphael Schwarz; Lars Lauer; Jurgen Fripp; Shekhar Chandra; Ying Xia; Ales Neubert; Olivier Salvado; Tania Brancato (DICTA, 2012)

Unilateral hip joint segmentation with shape priors learned from missing data. - Shekhar Chandra; Ying Xia; Craig Engstrom; Raphael Schwarz; Lars Lauer; Stuart Crozier; Olivier Salvado; Jurgen Fripp (ISBI, 2012)

Combining imaging and clinical data in manifold learning: Distance-based and graph-based extensions of Laplacian Eigenmaps. - Jean-Baptiste Fiot; Jurgen Fripp; Laurent D. Cohen (ISBI, 2012)

Local vs Global Descriptors of Hippocampus Shape Evolution for Alzheimer's Longitudinal Population Analysis. - Jean-Baptiste Fiot; Laurent Risser; Laurent D. Cohen; Jurgen Fripp; François-Xavier Vialard (STIA, 2012)

MR-Less Surface-Based Amyloid Estimation by Subject-Specific Atlas Selection and Bayesian Fusion. - Luping Zhou; Olivier Salvado; Vincent Doré; Pierrick Bourgeat; Parnesh Raniga; Victor Villemagne; Christopher Rowe; Jurgen Fripp (MICCAI (2), 2012)

A surface based approach for cortical thickness comparison between PiB+ and PiB- healthy control subjects. - Vincent Doré; Pierrick Bourgeat; Jurgen Fripp; Oscar Acosta; Gaël Chételat; Cassandra Szoeke; Kathryn A. Ellis; Ralph N. Martins; Victor Villemagne; Colin L. Masters; David Ames; Christopher Rowe; et al. (Image Processing, 2012)

Consistent estimation of shape parameters in statistical shape model by symmetric EM algorithm. - Kai-Kai Shen; Pierrick Bourgeat; Jurgen Fripp; Fabrice Mériaudeau; Olivier Salvado (Image Processing, 2012)

Constrained reverse diffusion for thick slice interpolation of 3D volumetric MRI images. - Ales Neubert; Olivier Salvado; Oscar Acosta; Pierrick Bourgeat; Jurgen Fripp (Comput. Medical Imaging Graph., 2012)

Detecting global and local hippocampal shape changes in Alzheimer's disease using statistical shape models. - Kai-Kai Shen; Jurgen Fripp; Fabrice Mériaudeau; Gaël Chételat; Olivier Salvado; Pierrick Bourgeat (NeuroImage, 2012)

Patient Specific Prostate Segmentation in 3-D Magnetic Resonance Images. - Shekhar S. Chandra; Jason Dowling; Kai-Kai Shen; Parnesh Raniga; Josien P. W. Pluim; Peter B. Greer; Olivier Salvado; Jurgen Fripp (IEEE Trans. Medical Imaging, 2012)

Classification Forests and Markov Random Field to Segment Chronic Ischemic Infarcts from Multimodal MRI. - Jhimli Mitra; Pierrick Bourgeat; Jurgen Fripp; Soumya Ghose; Stephen E. Rose; Olivier Salvado; Alan Connelly; Bruce Campbell 004; Susan Palmer; Gagan Sharma; Soren Christensen; Leeanne Carey (MBIA, 2013)

Structure-Guided Nonrigid Registration of CT-MR Pelvis Scans with Large Deformations in MR-Based Image Guided Radiation Therapy. - David Rivest-Hénault; Peter B. Greer; Jurgen Fripp; Jason Dowling (CLIP, 2013)

Research and applications: MilxXplore: a web-based system to explore large imaging datasets. - Pierrick Bourgeat; Vincent Doré; Victor Villemagne; Christopher Rowe; Olivier Salvado; Jurgen Fripp (J. Am. Medical Informatics Assoc., 2013)

Research and applications: Three-dimensional morphological and signal intensity features for detection of intervertebral disc degeneration from magnetic resonance images. - Ales Neubert; Jurgen Fripp; Craig Engstrom; Duncan Walker; Marc-André Weber; Raphael Schwarz; Stuart Crozier (J. Am. Medical Informatics Assoc., 2013)

Fast Multiatlas Selection Using Composition of Transformations for Radiation Therapy Planning. - David Rivest-Hénault; Soumya Ghose; Josien P. W. Pluim; Peter B. Greer; Jurgen Fripp; Jason A. Dowling (MCV, 2014)

Focused shape models for hip joint segmentation in 3D magnetic resonance images. - Shekhar S. Chandra; Ying Xia; Craig Engstrom; Stuart Crozier; Raphael Schwarz; Jurgen Fripp (Medical Image Anal., 2014)

Lesion segmentation from multimodal MRI using random forest following ischemic stroke. - Jhimli Mitra; Pierrick Bourgeat; Jurgen Fripp; Soumya Ghose; Stephen E. Rose; Olivier Salvado; Alan Connelly; Bruce Campbell 004; Susan Palmer; Gagan Sharma; Soren Christensen; Leeanne Carey (NeuroImage, 2014)

Investigating brain connectivity heritability in a twin study using diffusion imaging data. - Kai-Kai Shen; Stephen E. Rose; Jurgen Fripp; Katie L. McMahon; Greig I. de Zubicaray; Nicholas G. Martin; Paul M. Thompson; Margaret J. Wright; Olivier Salvado (NeuroImage, 2014)

Uninformative Frame Detection in Colonoscopy Through Motion, Edge and Color Features. - Mohammad Ali Armin; Girija Chetty; Jurgen Fripp; Hans de Visser; Cédric Dumas; Amir Fazlollahi; Florian Grimpen; Olivier Salvado (CARE@MICCAI, 2015)

Automated Intervertebral Disc Segmentation Using Probabilistic Shape Estimation and Active Shape Models. - Ales Neubert; Jurgen Fripp; Shekhar S. Chandra; Craig Engstrom; Stuart Crozier (CSI@MICCAI, 2015)

Computational analysis of PET by AIBL (CapAIBL): a cloud-based processing pipeline for the quantification of PET images. - Pierrick Bourgeat; Vincent Doré; Jurgen Fripp; Victor L. Villemagne; Christopher Rowe; Olivier Salvado (Image Processing, 2015)

Heritability analysis of surface-based cortical thickness estimation on a large twin cohort. - Kai-Kai Shen; Vincent Doré; Stephen E. Rose; Jurgen Fripp; Katie L. McMahon; Greig I. de Zubicaray; Nicholas G. Martin; Paul M. Thompson; Margaret J. Wright; Olivier Salvado (Image Processing, 2015)

Statistical shape model reconstruction with sparse anomalous deformations: Application to intervertebral disc herniation. - Ales Neubert; Jurgen Fripp; Craig Engstrom; Daniel Schwarz; Marc-André Weber; Stuart Crozier (Comput. Medical Imaging Graph., 2015)

Robust inverse-consistent affine CT-MR registration in MRI-assisted and MRI-alone prostate radiation therapy. - David Rivest-Hénault; Nicholas D. H. Dowson; Peter B. Greer; Jurgen Fripp; Jason A. Dowling (Medical Image Anal., 2015)

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. - David M. Cash; Chris Frost 001; Leonardo O. Iheme; Devrim Ünay; Melek Kandemir; Jurgen Fripp; Olivier Salvado; Pierrick Bourgeat; Martin Reuter 001; Bruce Fischl; Marco Lorenzi; Giovanni B. Frisoni; et al. (NeuroImage, 2015)

On the Use of Coupled Shape Priors for Segmentation of Magnetic Resonance Images of the Knee. - Jincheng Pang; Jeffrey B. Driban; Timothy E. McAlindon; José G. Tamez-Peña; Jurgen Fripp; Eric L. Miller 001 (IEEE J. Biomed. Health Informatics, 2015)

Maximum Pseudolikelihood Estimation for Mixture-Markov Random Field Segmentation of the Brain. - Amy Chan; Ian A. Wood; Jurgen Fripp (DICTA, 2016)

Automated Plant and Leaf Separation: Application in 3D Meshes of Wheat Plants. - Kirill Frolov; Jurgen Fripp; Chuong V. Nguyen; Robert Furbank; Geoff Bull; Peter Kuffner; Helen Daily; Xavier Sirault (DICTA, 2016)

3D Scanning System for Automatic High-Resolution Plant Phenotyping. - Chuong V. Nguyen; Jurgen Fripp; David R. Lovell; Robert Furbank; Peter Kuffner; Helen Daily; Xavier Sirault (DICTA, 2016)

Anatomical hubs from spectral clustering of structural connectomes. - Jhimli Mitra; Soumya Ghose; Pierrick Bourgeat; Jurgen Fripp; Jane L. Mathias; Stephen E. Rose; Olivier Salvado (ISBI, 2016)

Incremental shape learning of 3D surfaces of the knee, data from the osteoarthritis initiative. - Ales Neubert; Ibrahim Naser; Anthony Paproki; Craig Engstrom; Jurgen Fripp; Stuart Crozier; Shekhar S. Chandra (ISBI, 2016)

Automated segmentation and T2-mapping of the posterior cruciate ligament from MRI of the knee: Data from the osteoarthritis initiative. - Anthony Paproki; Katharine J. Wilson; Rachel K. Surowiec; Charles P. Ho; Abinash Pant; Pierrick Bourgeat; Craig Engstrom; Stuart Crozier; Jurgen Fripp (ISBI, 2016)

CapAIBL: Automated Reporting of Cortical PET Quantification Without Need of MRI on Brain Surface Using a Patch-Based Method. - Vincent Doré; Pierrick Bourgeat; Victor L. Villemagne; Jurgen Fripp; Lance S. Macaulay; Colin L. Masters; David Ames; Christopher Rowe; Olivier Salvado (Patch-MI@MICCAI, 2016)

HIST: HyperIntensity Segmentation Tool. - José V. Manjón; Pierrick Coupé; Parnesh Raniga; Ying Xia; Jurgen Fripp; Olivier Salvado (Patch-MI@MICCAI, 2016)

Statistical machine learning to identify traumatic brain injury (TBI) from structural disconnections of white matter networks. - Jhimli Mitra; Kai-Kai Shen; Soumya Ghose; Pierrick Bourgeat; Jurgen Fripp; Olivier Salvado; Kerstin Pannek; D. Jamie Taylor; Jane L. Mathias; Stephen E. Rose (NeuroImage, 2016)

PET-only 18F-AV1451 tau quantification. - Pierrick Bourgeat; Victor L. Villemagne; Vincent Doré; Colin L. Masters; David Ames; Christopher C. Rowe; Olivier Salvado; Jurgen Fripp (ISBI, 2017)

A normalisation framework for quantitative brain imaging; application to quantitative susceptibility mapping. - Amir Fazlollahi; Scott Ayton; Pierrick Bourgeat; Parnesh Raniga; Amanda Ng; Jurgen Fripp; David Ames; Colin L. Masters; Christopher C. Rowe; Victor L. Villemagne; Ashley I. Bush; Olivier Salvado (ISBI, 2017)

A spatio-temporal atlas of neonatal diffusion MRI based on kernel ridge regression. - Kai-Kai Shen; Jurgen Fripp; Kerstin Pannek; Joanne George; Paul B. Colditz; Roslyn N. Boyd; Stephen E. Rose (ISBI, 2017)

Automated cartilage segmentation from 3D MR images of hip joint using an ensemble of neural networks. - Ying Xia; José V. Manjón; Craig Engstrom; Stuart Crozier; Olivier Salvado; Jurgen Fripp (ISBI, 2017)

Evaluation and comparison of 3D intervertebral disc localization and segmentation methods for 3D T2 MR data: A grand challenge. - Guoyan Zheng; Chengwen Chu; Daniel L. Belavy; Bulat Ibragimov; Robert Korez; Tomaz Vrtovec; Hugo Hutt; Richard M. Everson; Judith Meakin; Isabel Lopez Andrade; Ben Glocker; Hao Chen 011; et al. (Medical Image Anal., 2017)

3D cGAN based cross-modality MR image synthesis for brain tumor segmentation. - Biting Yu; Luping Zhou; Lei Wang 001; Jurgen Fripp; Pierrick Bourgeat (ISBI, 2018)

A Framework to Objectively Identify Reference Regions for Normalizing Quantitative Imaging. - Amir Fazlollahi; Scott Ayton; Pierrick Bourgeat; Ibrahima Diouf; Parnesh Raniga; Jurgen Fripp; James Doecke; David Ames; Colin L. Masters; Christopher C. Rowe; Victor L. Villemagne; Ashley I. Bush; et al. (MICCAI (1), 2018)

Data Augmentation Using Synthetic Lesions Improves Machine Learning Detection of Microbleeds from MRI. - Saba Momeni; Amir Fazlollahi; Pierrick Bourgeat; Parnesh Raniga; Paul A. Yates; Nawaf Yassi; Patricia M. Desmond; Jurgen Fripp; Yongsheng Gao 001; Olivier Salvado (SASHIMI@MICCAI, 2018)

MRI Denoising and Artefact Removal Using Self-Organizing Maps for Fast Global Block-Matching. - Lee B. Reid; Ashley Gillman; Alex M. Pagnozzi; José V. Manjón; Jurgen Fripp (Patch-MI@MICCAI, 2018)

Investigating Brain Age Deviation in Preterm Infants: A Deep Learning Approach. - Susmita Saha; Alex M. Pagnozzi; Joanne George; Paul B. Colditz; Roslyn N. Boyd; Stephen E. Rose; Jurgen Fripp; Kerstin Pannek (DATRA/PIPPI@MICCAI, 2018)

MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. - José V. Manjón; Pierrick Coupé; Parnesh Raniga; Ying Xia; Patricia M. Desmond; Jurgen Fripp; Olivier Salvado (Comput. Medical Imaging Graph., 2018)

A lightweight rapid application development framework for biomedical image analysis. - Shekhar S. Chandra; Jason A. Dowling; Craig Engstrom; Ying Xia; Anthony Paproki; Ales Neubert; David Rivest-Hénault; Olivier Salvado; Stuart Crozier; Jurgen Fripp (Comput. Methods Programs Biomed., 2018)

Implementing the centiloid transformation for 11C-PiB and β-amyloid 18F-PET tracers using CapAIBL. - Pierrick Bourgeat; Vincent Doré; Jurgen Fripp; David Ames; Colin L. Masters; Olivier Salvado; Victor L. Villemagne; Christopher C. Rowe (NeuroImage, 2018)

High Contrast T1-Weigthed Mri with Fluid and White Matter Suppression Using Mp2Rage. - Jeremy Beaumont; Hervé Saint-Jalmes; Oscar Acosta; Tobias Kober; Mark Tanner; Jean-Christophe Ferré; Olivier Salvado; Jurgen Fripp; Giulio Gambarota (ISBI, 2019)

Identification of Functional Connectivity Features in Depression Subtypes Using a Data-Driven Approach. - Xingjuan Li; Samantha Burnham; Jurgen Fripp; Yu Li 018; Xue Li 001; Amir Fazlollahi; Pierrick Bourgeat (GLMI@MICCAI, 2019)

Quantifying deep grey matter atrophy using automated segmentation approaches: A systematic review of structural MRI studies. - Alex M. Pagnozzi; Jurgen Fripp; Stephen E. Rose (NeuroImage, 2019)

Non-linear realignment improves hippocampus subfield segmentation reliability. - Thomas B. Shaw; Steffen Bollmann; Nicole T. Atcheson; Lachlan T. Strike; Christine Cong Guo; Katie L. McMahon; Jurgen Fripp; Margaret J. Wright; Olivier Salvado; Markus Barth (NeuroImage, 2019)

Ea-GANs: Edge-Aware Generative Adversarial Networks for Cross-Modality MR Image Synthesis. - Biting Yu; Luping Zhou; Lei Wang 001; Yinghuan Shi; Jurgen Fripp; Pierrick Bourgeat (IEEE Trans. Medical Imaging, 2019)

Fast High Dynamic Range MRI by Contrast Enhancement Networks. - Matthew Marques; Craig Engstrom; Jurgen Fripp; Stuart Crozier; Shekhar S. Chandra (ISBI, 2020)

3D Brain MRI GAN-Based Synthesis Conditioned on Partial Volume Maps. - Filip Rusak; Rodrigo Santa Cruz; Pierrick Bourgeat; Clinton Fookes; Jurgen Fripp; Andrew P. Bradley; Olivier Salvado (SASHIMI@MICCAI, 2020)

Learning Sample-Adaptive Intensity Lookup Table for Brain Tumor Segmentation. - Biting Yu; Luping Zhou; Lei Wang 001; Wanqi Yang; Ming Yang 014; Pierrick Bourgeat; Jurgen Fripp (MICCAI (4), 2020)

Fabric Image Representation Encoding Networks for Large-scale 3D Medical Image Analysis. - Siyu Liu 002; Wei Dai; Craig Engstrom; Jurgen Fripp; Peter B. Greer; Stuart Crozier; Jason A. Dowling; Shekhar S. Chandra (CoRR, 2020)

Medical Image Harmonization Using Deep Learning Based Canonical Mapping: Toward Robust and Generalizable Learning in Imaging. - Vishnu M. Bashyam; Jimit Doshi; Güray Erus; Dhivya Srinivasan; Ahmed Abdulkadir; Mohamad Habes; Yong Fan 001; Colin L. Masters; Paul Maruff; Chuanjun Zhuo; Henry Völzke; Sterling C. Johnson; et al. (CoRR, 2020)

Brain microstructure and morphology of very preterm-born infants at term equivalent age: Associations with motor and cognitive outcomes at 1 and 2 years. - Kerstin Pannek; Joanne George; Roslyn N. Boyd; Paul B. Colditz; Stephen E. Rose; Jurgen Fripp (NeuroImage, 2020)

Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan. - Raymond Pomponio; Güray Erus; Mohamad Habes; Jimit Doshi; Dhivya Srinivasan; Elizabeth Mamourian; Vishnu Bashyam; Ilya M. Nasrallah; Theodore D. Satterthwaite; Yong Fan 001; Lenore J. Launer; Colin L. Masters; et al. (NeuroImage, 2020)

Predicting motor outcome in preterm infants from very early brain diffusion MRI using a deep learning convolutional neural network (CNN) model. - Susmita Saha; Alex M. Pagnozzi; Pierrick Bourgeat; Joanne George; DanaKai Bradford; Paul B. Colditz; Roslyn N. Boyd; Stephen E. Rose; Jurgen Fripp; Kerstin Pannek (NeuroImage, 2020)

Sample-Adaptive GANs: Linking Global and Local Mappings for Cross-Modality MR Image Synthesis. - Biting Yu; Luping Zhou; Lei Wang 001; Yinghuan Shi; Jurgen Fripp; Pierrick Bourgeat (IEEE Trans. Medical Imaging, 2020)

Towards a generalization of the MP2RAGE partial volume estimation model to account for B1+ inhomogeneities at 7T. - Jeremy Beaumont; Oscar Acosta; Parnesh Raniga; Giulio Gambarota; Jurgen Fripp (ISBI, 2021)

Going Deeper With Brain Morphometry Using Neural Networks. - Rodrigo Santa Cruz; Léo Lebrat; Pierrick Bourgeat; Vincent Doré; Jason Dowling; Jurgen Fripp; Clinton Fookes; Olivier Salvado (ISBI, 2021)

Smocam: Smooth Conditional Attention Mask For 3d-Regression Models. - Salamata Konate; Léo Lebrat; Rodrigo Santa Cruz; Pierrick Bourgeat; Vincent Doré; Jurgen Fripp; Andrew P. Bradley; Clinton Fookes; Olivier Salvado (ISBI, 2021)

Detail Matters: High-Frequency Content for Realistic Synthetic MRI Generation. - Filip Rusak; Rodrigo Santa Cruz; Elliot Smith 003; Jurgen Fripp; Clinton Fookes; Pierrick Bourgeat; Andrew P. Bradley (SASHIMI@MICCAI, 2021)

CorticalFlow: A Diffeomorphic Mesh Transformer Network for Cortical Surface Reconstruction. - Léo Lebrat; Rodrigo Santa Cruz; Frédéric de Gournay; Darren Fu; Pierrick Bourgeat; Jurgen Fripp; Clinton Fookes; Olivier Salvado (NeurIPS, 2021)

DeepCSR: A 3D Deep Learning Approach for Cortical Surface Reconstruction. - Rodrigo Santa Cruz; Léo Lebrat; Pierrick Bourgeat; Clinton Fookes; Jurgen Fripp; Olivier Salvado (WACV, 2021)

Non-negative matrix factorisation improves Centiloid robustness in longitudinal studies. - Pierrick Bourgeat; Vincent Doré; James Doecke; David Ames; Colin L. Masters; Christopher C. Rowe; Jurgen Fripp; Victor L. Villemagne (NeuroImage, 2021)

SA-LuT-Nets: Learning Sample-Adaptive Intensity Lookup Tables for Brain Tumor Segmentation. - Biting Yu; Luping Zhou; Lei Wang 001; Wanqi Yang; Ming Yang 014; Pierrick Bourgeat; Jurgen Fripp (IEEE Trans. Medical Imaging, 2021)

Trans-ResNet: Integrating Transformers and CNNs for Alzheimer's disease classification. - Chao Li; Yue Cui 005; Na Luo; Yong Liu 002; Pierrick Bourgeat; Jurgen Fripp; Tianzi Jiang (ISBI, 2022)

CorticalFlow++: Boosting Cortical Surface Reconstruction Accuracy, Regularity, and Interoperability. - Rodrigo Santa Cruz; Léo Lebrat; Darren Fu; Pierrick Bourgeat; Jurgen Fripp; Clinton Fookes; Olivier Salvado (MICCAI (5), 2022)

Lesser of Two Evils Improves Learning in the Context of Cortical Thickness Estimation Models - Choose Wisely. - Filip Rusak; Rodrigo Santa Cruz; Elliot Smith 003; Jurgen Fripp; Clinton Fookes; Pierrick Bourgeat; Andrew P. Bradley (DALI@MICCAI, 2022)

Anomaly-Aware 3D Segmentation of Knee Magnetic Resonance Images. - Boyeong Woo; Craig Engstrom; Jurgen Fripp; Stuart Crozier; Shekhar S. Chandra (MIDL, 2022)

CorticalFlow: A Diffeomorphic Mesh Deformation Module for Cortical Surface Reconstruction. - Léo Lebrat; Rodrigo Santa Cruz; Frédéric de Gournay; Darren Fu; Pierrick Bourgeat; Jurgen Fripp; Clinton Fookes; Olivier Salvado (CoRR, 2022)

Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T. - Jeryn Chang; Frederik Steyn; Shyuan Ngo; Robert Henderson; Christine Cong Guo; Steffen Bollmann; Jurgen Fripp; Markus Barth; Thomas B. Shaw (J. Open Source Softw., 2022)

Quantifiable brain atrophy synthesis for benchmarking of cortical thickness estimation methods. - Filip Rusak; Rodrigo Santa Cruz; Léo Lebrat; Ondrej Hlinka; Jurgen Fripp; Elliot Smith 003; Clinton Fookes; Andrew P. Bradley; Pierrick Bourgeat (Medical Image Anal., 2022)

β-amyloid PET harmonisation across longitudinal studies: Application to AIBL, ADNI and OASIS3. - Pierrick Bourgeat; Vincent Doré; Samantha Burnham; Tammie L. S. Benzinger; Duygu Tosun; Shenpeng Li; Manu S. Goyal; Pamela LaMontagne; Liang Jin; Christopher C. Rowe; Michael W. Weiner; John C. Morris; et al. (NeuroImage, 2022)

Generalization Properties of Geometric 3D Deep Learning Models for Medical Segmentation. - Léo Lebrat; Rodrigo Santa Cruz; Reuben Dorent; Javier Urriola Yaksic; Alex M. Pagnozzi; Gregg Belous; Pierrick Bourgeat; Jurgen Fripp; Clinton Fookes; Olivier Salvado (ISBI, 2023)

Medical Shape Pattern Analysis with MeshCNN. - Sze-Nung Leung; Jason A. Dowling; Jurgen Fripp; Kai-Kai Shen; Shekhar S. Chandra (ISBI, 2023)

When to Use Augmentation - Variability Insufficient for Cortical Thickness Estimation Improvement. - Filip Rusak; Rodrigo Santa Cruz; Hilda Chourak; Elliot Smith 003; Jurgen Fripp; Clinton Fookes; Pierrick Bourgeat; Andrew P. Bradley (ISBI, 2023)

An Informatics Platform for the Management of Data for Australian Dementia Network (ADNeT) Initiative. - Julie Trinder; Pierrick Bourgeat; Ying Xia; Jurgen Fripp; Parnesh Raniga (MedInfo, 2023)

Semantic Segmentation of 3D Medical Images Through a Kaleidoscope: Data from the Osteoarthritis Initiative. - Boyeong Woo; Marlon Bran Lorenzana; Craig Engstrom; William Baresic; Jurgen Fripp; Stuart Crozier; Shekhar S. Chandra (MIDL, 2023)

DBCE : A Saliency Method for Medical Deep Learning Through Anatomically-Consistent Free-Form Deformations. - Joshua Peters; Léo Lebrat; Rodrigo Santa Cruz; Aaron Nicolson; Gregg Belous; Salamata Konate; Parnesh Raniga; Vincent Doré; Pierrick Bourgeat; Jurgen Mejan-Fripp; Clinton Fookes; Olivier Salvado (WACV, 2023)

Gene-SGAN: a method for discovering disease subtypes with imaging and genetic signatures via multi-view weakly-supervised deep clustering. - Zhijian Yang; Junhao Wen 002; Ahmed Abdulkadir; Yuhan Cui; Güray Erus; Elizabeth Mamourian; Randa Melhem; Dhivya Srinivasan; Sindhuja T. Govindarajan; Jiong Chen; Mohamad Habes; Colin L. Masters; et al. (CoRR, 2023)

Early brain morphometrics from neonatal MRI predict motor and cognitive outcomes at 2-years corrected age in very preterm infants. - Alex M. Pagnozzi; Liza van Eijk; Kerstin Pannek; Roslyn N. Boyd; Susmita Saha; Joanne George; Samudragupta Bora; DanaKai Bradford; Michael Fahey; Michael Ditchfield; Atul Malhotra; Helen G. Liley; et al. (NeuroImage, 2023)

Functional re-organization of hippocampal-cortical gradients during naturalistic memory processes. - Léonie Borne; Ye Tian 031; Michelle K. Lupton; Johan N. van der Meer; Jayson Jeganathan; Bryan Paton; Nikitas Koussis; Christine C. Guo; Gail A. Robinson; Jurgen Fripp; Andrew Zalesky; Michael Breakspear (NeuroImage, 2023)

Disease progression modelling of Alzheimer's disease using probabilistic principal components analysis. - Martin Saint-Jalmes; Victor Fedyashov; Daniel Beck; Timothy Baldwin; Noel G. Faux; Pierrick Bourgeat; Jurgen Fripp; Colin L. Masters; Benjamin Goudey (NeuroImage, 2023)

Automated anomaly-aware 3D segmentation of bones and cartilages in knee MR images from the Osteoarthritis Initiative. - Boyeong Woo; Craig Engstrom; William Baresic; Jurgen Fripp; Stuart Crozier; Shekhar S. Chandra (Medical Image Anal., 2024)

Accuracy of TrUE-Net in comparison to established white matter hyperintensity segmentation methods: An independent validation study. - Jeremy F. Strain; Maryam Rahmani; Donna L. Dierker; Christopher J. Owen; Hussain Jafri; Andrei G. Vlassenko; Kyle B. Womack; Jurgen Fripp; Duygu Tosun; Tammie L. S. Benzinger; Michael Weiner 001; Colin L. Masters; et al. (NeuroImage, 2024)