MARS: Microarray analysis, retrieval, and storage system. - Michael Maurer; Robert Molidor; Alexander Sturn; Jürgen Hartler; Hubert Hackl; Gernot Stocker; Andreas Prokesch; Marcel Scheideler; Zlatko Trajanoski (BMC Bioinform., 2005)

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. - Bernhard Mlecnik; Marcel Scheideler; Hubert Hackl; Jürgen Hartler; Fátima Sánchez-Cabo; Zlatko Trajanoski (Nucleic Acids Res., 2005)

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data. - Jürgen Hartler; Gerhard G. Thallinger; Gernot Stocker; Alexander Sturn; Thomas R. Burkard; Erik Körner; Robert Rader; Andreas Schmidt 009; Karl Mechtler; Zlatko Trajanoski (BMC Bioinform., 2007)

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data. - Jürgen Hartler; Martin Trötzmüller; Chandramohan Chitraju; Friedrich Spener; Harald C. Köfeler; Gerhard G. Thallinger (Bioinform., 2011)

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data. - Jürgen Hartler; Ravi Tharakan; Harald C. Köfeler; David R. Graham; Gerhard G. Thallinger (Briefings Bioinform., 2013)

Identification and Quantification of Oxidized Lipids in LC-MS Lipidomics Data. - Christoph A. Krettler; Jürgen Hartler; Gerhard G. Thallinger (dHealth, 2020)