Simulation of biochemical networks using COPASI: a complex pathway simulator. - Sven Sahle; Ralph Gauges; Jürgen Pahle; Natalia Simus; Ursula Kummer; Stefan Hoops; Christine Lee; Mudita Singhal; Liang Xu; Pedro Mendes 001 (WSC, 2006)

Approaches to complexity reduction in a systems biology research environment (SYCAMORE). - Irina Surovtsova; Sven Sahle; Jürgen Pahle; Ursula Kummer (WSC, 2006)

COPASI - a COmplex PAthway SImulator. - Stefan Hoops; Sven Sahle; Ralph Gauges; Christine Lee; Jürgen Pahle; Natalia Simus; Mudita Singhal; Liang Xu; Pedro Mendes 001; Ursula Kummer (Bioinform., 2006)

Information transfer in signaling pathways: A study using coupled simulated and experimental data. - Jürgen Pahle; Anne K. Green; C. Jane Dixon; Ursula Kummer (BMC Bioinform., 2008)

Biochemical simulations: stochastic, approximate stochastic and hybrid approaches. - Jürgen Pahle (Briefings Bioinform., 2009)

Biochemical fluctuations, optimisation and the linear noise approximation. - Jürgen Pahle; Joseph D. Challenger; Pedro Mendes 001; Alan J. McKane (BMC Syst. Biol., 2012)

CoRC: the COPASI R Connector. - Jonas Förster; Frank T. Bergmann; Jürgen Pahle (Bioinform., 2021)