g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments. - Jüri Reimand; Meelis Kull; Hedi Peterson; Jaanus Hansen; Jaak Vilo (Nucleic Acids Res., 2007)

KEGGanim: pathway animations for high-throughput data. - Priit Adler; Jüri Reimand; Jürgen Jänes; Raivo Kolde; Hedi Peterson; Jaak Vilo (Bioinform., 2008)

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. - Jüri Reimand; Laur Tooming; Hedi Peterson; Priit Adler; Jaak Vilo (Nucleic Acids Res., 2008)

VisHiC - hierarchical functional enrichment analysis of microarray data. - Darya Krushevskaya; Hedi Peterson; Jüri Reimand; Meelis Kull; Jaak Vilo (Nucleic Acids Res., 2009)

g: Profiler - a web server for functional interpretation of gene lists (2011 update). - Jüri Reimand; Tambet Arak; Jaak Vilo (Nucleic Acids Res., 2011)

HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery. - Alvin Leung 001; Gary D. Bader; Jüri Reimand (Bioinform., 2014)

g: Profiler - a web server for functional interpretation of gene lists (2016 update). - Jüri Reimand; Tambet Arak; Priit Adler; Liis Kolberg; Sulev Reisberg; Hedi Peterson; Jaak Vilo (Nucleic Acids Res., 2016)

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. - Michal Krassowski; Marta Paczkowska; Kim Cullion; Tina Huang; Irakli Dzneladze; B. F. Francis Ouellette; Joseph Tadashi Yamada; Amelie Fradet-Turcotte; Jüri Reimand (Nucleic Acids Res., 2018)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

Chromatin accessibility of primary human cancers ties regional mutational processes and signatures with tissues of origin. - Oliver Ocsenas; Jüri Reimand (PLoS Comput. Biol., 2022)