Inductive Inference up to Immune Sets. - Rusins Freivalds; Juris Viksna (AII, 1989)

Probabilistic Inference of Approximations. - Juris Viksna (Nonmonotonic and Inductive Logic, 1991)

Learning With Growing Quality. - Juris Viksna (ALT, 1993)

Deciding Reachability for Planar Multi-polynomial Systems. - Karlis Cerans; Juris Viksna (Hybrid Systems, 1995)

Probabilitic Limit Identification up to "Small" Sets. - Juris Viksna (ALT, 1996)

Inductive Inference of Limiting Programs with Bounded Number of Mind Changes. - Juris Viksna (Int. J. Found. Comput. Sci., 1996)

Pattern discovery methods for protein topology diagrams. - David R. Gilbert; Juris Viksna (German Conference on Bioinformatics, 1999)

Pattern Matching and Pattern Discovery Algorithms for Protein Topologies. - Juris Viksna; David R. Gilbert (WABI, 2001)

A Computer System to Perform Structure Comparison using Representations of Protein Structure. - David R. Gilbert; David R. Westhead; Juris Viksna; Janet M. Thornton (Comput. Chem., 2002)

Protein structure comparison based o n profiles of topological motifs: a feasible way to deal with information from negative examples. - Juris Viksna; David R. Gilbert; Gilleain M. Torrance (German Conference on Bioinformatics, 2003)

Protein Structure Comparison Based on Fold Evolution. - Natalja Kurbatova; Laura Mancinska; Juris Viksna (German Conference on Bioinformatics, 2007)

Assessment of the probabilities for evolutionary structural changes in protein folds. - Juris Viksna; David R. Gilbert (Bioinform., 2007)

PASSIM - an open source software system for managing information in biomedical studies. - Juris Viksna; Edgars Celms; Martins Opmanis; Karlis Podnieks; Peteris Rucevskis; Andris Zarins; Amy Barrett; Sudeshna Guha Neogi; Maria Krestyaninova; Mark I. McCarthy; Alvis Brazma; Ugis Sarkans (BMC Bioinform., 2007)

Exploration of Evolutionary Relations between Protein Structures. - Natalja Kurbatova; Juris Viksna (BIRD, 2008)

A System for Information Management in BioMedical Studies - SIMBioMS. - Maria Krestyaninova; Andris Zarins; Juris Viksna; Natalja Kurbatova; Peteris Rucevskis; Sudeshna Guha Neogi; Mike Gostev; Teemu Perheentupa; Juha Knuuttila; Amy Barrett; Ilkka Lappalainen; Johan Rung; et al. (Bioinform., 2009)

On WQO Property for Different Quasi Orderings of the Set of Permutations. - Sandra Ose; Juris Viksna (MEMICS, 2012)

Modeling and Analysis of Qualitative Behavior of Gene Regulatory Networks. - Alvis Brazma; Karlis Cerans; Dace Ruklisa; Thomas Schlitt; Juris Viksna (HSB, 2014)

Gene Duplication Models and Reconstruction of Gene Regulatory Network Evolution from Network Structure. - Juris Viksna; David R. Gilbert (Balt. J. Mod. Comput., 2016)

Application of Graph Clustering and Visualisation Methods to Analysis of Biomolecular Data. - Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Gatis Melkus; Martins Opmanis; Darta Rituma; Peteris Rucevskis; Juris Viksna (DB&IS, 2018)

Graph-based Characterisations of Cell Types and Functionally Related Modules in Promoter Capture Hi-C Data. - Lelde Lace; Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Paulis Kikusts; Martins Opmanis; Darta Rituma; Juris Viksna (BIOINFORMATICS, 2019)

Characteristic Topological Features of Promoter Capture Hi-C Interaction Networks. - Lelde Lace; Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Paulis Kikusts; Martins Opmanis; Darta Rituma; Juris Viksna (BIOSTEC (Selected Papers), 2019)

Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters - the case of phage λ. - Dace Ruklisa; Alvis Brazma; Karlis Cerans; Thomas Schlitt; Juris Viksna (BMC Bioinform., 2019)

Topological structure analysis of chromatin interaction networks. - Juris Viksna; Gatis Melkus; Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Martins Opmanis; Darta Rituma; Peteris Rucevskis (BMC Bioinform., 2019)

Network motif-based analysis of regulatory patterns in paralogous gene pairs. - Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Martins Opmanis; Darta Rituma; Juris Viksna (J. Bioinform. Comput. Biol., 2020)

POSTER: A Transparent Remote Quantum Random Number Generator over a Quantum-Safe Link. - Sergejs Kozlovics; Juris Viksna (ACNS Workshops, 2022)

Hybrid Gene Regulation Models of Mammalian Circadian Cycles. - Lelde Lace; Karlis Cerans; Karlis Freivalds; Gatis Melkus; Juris Viksna (BIOINFORMATICS, 2022)

Behavioral dynamics of bacteriophage gene regulatory networks. - Gatis Melkus; Karlis Cerans; Karlis Freivalds; Lelde Lace; Darta Zajakina; Juris Viksna (J. Bioinform. Comput. Biol., 2022)

POSTER: Integrating Quantum Key Distribution into Hybrid Quantum-Classical Networks. - Juris Viksna; Sergejs Kozlovics; Edgars Rencis (ACNS Workshops, 2023)

Hybrid QKD-based framework for secure enterprise communication system. - Edgars Rencis; Juris Viksna; Sergejs Kozlovics; Edgars Celms; Davis Larins; Krisjanis Petrucena (CENTERIS/ProjMAN/HCist, 2023)

Clique-Based Topological Characterization of Chromatin Interaction Hubs. - Gatis Melkus; Sandra Silina; Andrejs Sizovs; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ISBRA, 2023)

Quantum Key Distribution as a Service and Its Injection into TLS. - Sergejs Kozlovics; Krisjanis Petrucena; Davis Larins; Juris Viksna (ISPEC, 2023)

Gene Expression Variability Linked to Chromatin Clique Configurations and cis-Regulatory Elements. - Gatis Melkus; Andrejs Sizovs; Sandra Silina; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ICCBB, 2024)

Exploration and Visualization Methods for Chromatin Interaction Data. - Andrejs Sizovs; Sandra Silina; Gatis Melkus; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ISBRA (1), 2024)

A technique for preserving network structure in randomized Hi-C data. - Andrejs Sizovs; Gatis Melkus; Peteris Rucevskis; Sandra Silina; Lelde Lace; Edgars Celms; Juris Viksna (J. Bioinform. Comput. Biol., 2024)

Enhanced Graph Representations of Chromatin Interaction Networks. - Edgars Celms; Lelde Lace; Gatis Melkus; Peteris Rucevskis; Sandra Silina; Andrejs Sizovs; Juris Viksna (BIOSTEC (1), 2025)