Painting the Picture of Software Impact with the Research Software Directory. - Jurriaan H. Spaaks; Tom Klaver; Stefan Verhoeven; Jason Maassen; Tom Bakker; Atze van der Ploeg; Ben van Werkhoven; Willem Robert van Hage; Rob V. van Nieuwpoort (eScience, 2018)

Nine Best Practices for Research Software Registries and Repositories: A Concise Guide. - Alain Monteil; Alejandra N. González-Beltrán; Alexandros Ioannidis; Alice Allen; Allen Lee; Anita E. Bandrowski; Bruce E. Wilson; Bryce D. Mecum; Caifan Du; Carly Robinson; Daniel Garijo; Daniel S. Katz; et al. (CoRR, 2020)

matchms - processing and similarity evaluation of mass spectrometry data. - Florian Huber; Stefan Verhoeven; Christiaan Meijer; Hanno Spreeuw; Efraín Castilla; Cunliang Geng; Justin J. J. van der Hooft; Simon Rogers; Adam Belloum; Faruk Diblen; Jurriaan H. Spaaks (J. Open Source Softw., 2020)

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. - Florian Huber; Lars Ridder; Stefan Verhoeven; Jurriaan H. Spaaks; Faruk Diblen; Simon Rogers; Justin J. J. van der Hooft (PLoS Comput. Biol., 2021)