Drug Repositioning for Colorectal Cancer Patient Subgroups Using Exploratory Mining and Network Analysis. - Zainab Al-Taie; Danlu Liu; Christos Papageorgiou; Jussuf T. Kaifi; Jonathan B. Mitchem; Chi-Ren Shyu (AMIA, 2020)

Identifying patient-specific flow of signal transduction perturbed by multiple single-nucleotide alterations. - Olha Kholod; Chi-Ren Shyu; Jonathan B. Mitchem; Jussuf T. Kaifi; Dmitriy Shin (Quant. Biol., 2020)

Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential. - Zainab Al-Taie; Danlu Liu; Jonathan B. Mitchem; Christos Papageorgiou; Jussuf T. Kaifi; Wesley C. Warren; Chi-Ren Shyu (J. Biomed. Informatics, 2021)

Understanding common key indicators of successful and unsuccessful cancer drug trials using a contrast mining framework on ClinicalTrials.gov. - Shu-Kai Chang; Danlu Liu; Jonathan B. Mitchem; Christos Papageorgiou; Jussuf T. Kaifi; Chi-Ren Shyu (J. Biomed. Informatics, 2023)

Identifying gene expression programs in single-cell RNA-seq data using linear correlation explanation. - Yulia I. Nussbaum; K. S. M. Tozammel Hossain; Jussuf T. Kaifi; Wesley C. Warren; Chi-Ren Shyu; Jonathan B. Mitchem (J. Biomed. Informatics, 2024)