Depth and nonlinearity induce implicit exploration for RL. - Justas Dauparas; Ryota Tomioka; Katja Hofmann (CoRR, 2018)

Iterative SE(3)-Transformers. - Fabian B. Fuchs; Edward Wagstaff; Justas Dauparas; Ingmar Posner (GSI, 2021)

RFDesign: Protein hallucination and inpainting with RosettaFold. - Jue Wang; Sidney Lisanza; David Juergens; Doug Tischer; Joe Watson; Ivan Anishchenko; Minkyung Baek; Justas Dauparas; Sergey Ovchinnikov (Zenodo, 2022)

End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. - Samantha Petti; Nicholas Bhattacharya; Roshan Rao; Justas Dauparas; Neil Thomas; Juannan Zhou; Alexander M. Rush; Peter K. Koo; Sergey Ovchinnikov 001 (Bioinform., 2023)