Spaced seed data structures. - Inanç Birol; Hamid Mohamadi; Anthony Raymond; Karthika Raghavan; Justin Chu; Benjamin P. Vandervalk; Shaun D. Jackman; René L. Warren (BIBM, 2014)

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. - Benjamin P. Vandervalk; Shaun D. Jackman; Anthony Raymond; Hamid Mohamadi; Chen Yang; Dean A. Attali; Justin Chu; René L. Warren; Inanç Birol (BIBM, 2014)

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. - Justin Chu; Sara Sadeghi; Anthony Raymond; Shaun D. Jackman; Ka Ming Nip; Richard Mar; Hamid Mohamadi; Yaron S. N. Butterfield; A. Gordon Robertson; Inanç Birol (Bioinform., 2014)

ntHash: recursive nucleotide hashing. - Hamid Mohamadi; Justin Chu; Benjamin P. Vandervalk; Inanç Birol (Bioinform., 2016)

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art. - Justin Chu; Hamid Mohamadi; René L. Warren; Chen Yang; Inanç Birol (Bioinform., 2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci. - Erdi Kucuk; Justin Chu; Benjamin P. Vandervalk; S. Austin Hammond; René L. Warren; Inanç Birol (Bioinform., 2017)

ntPack: A Software Package for Big Data in Genomics. - Inanç Birol; Hamid Mohamadi; Justin Chu (BDCAT, 2018)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data. - Hamza Khan; Hamid Mohamadi; Benjamin P. Vandervalk; René L. Warren; Justin Chu; Inanç Birol (Bioinform., 2018)

ARCS: scaffolding genome drafts with linked reads. - Sarah Yeo; Lauren Coombe; René L. Warren; Justin Chu; Inanç Birol (Bioinform., 2018)

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. - Lauren Coombe; Jessica Zhang; Benjamin P. Vandervalk; Justin Chu; Shaun D. Jackman; Inanç Birol; René L. Warren (BMC Bioinform., 2018)

Tigmint: correcting assembly errors using linked reads from large molecules. - Shaun D. Jackman; Lauren Coombe; Justin Chu; René L. Warren; Benjamin P. Vandervalk; Sarah Yeo; Zhuyi Xue; Hamid Mohamadi; Jörg Bohlmann; Steven J. M. Jones; Inanç Birol (BMC Bioinform., 2018)

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs. - Lauren Coombe; Vladimir Nikolic; Justin Chu; Inanç Birol; René L. Warren (Bioinform., 2020)

Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters. - Justin Chu; Hamid Mohamadi; Emre Erhan; Jeffery Tse; Readman Chiu; Sarah Yeo; Inanç Birol (Proc. Natl. Acad. Sci. USA, 2020)

90% Accuracy for Photoplethysmography-Based Non-Invasive Blood Glucose Prediction by Deep Learning with Cohort Arrangement and Quarterly Measured HbA1c. - Justin Chu; Wen-Tse Yang; Wei-Ru Lu; Yao-Ting Chang; Tung-Han Hsieh; Fu-Liang Yang (Sensors, 2021)

GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies. - Eric Chen; Justin Chu; Jessica Zhang; René L. Warren; Inanç Birol (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

RResolver: efficient short-read repeat resolution within ABySS. - Vladimir Nikolic; Amirhossein Afshinfard; Justin Chu; Johnathan Wong; Lauren Coombe; Ka Ming Nip; René L. Warren; Inanç Birol (BMC Bioinform., 2022)

Effective fault localization and context-aware debugging for concurrent programs. - Justin Chu; Tingting Yu 001; Jane Huffman Hayes; Xue Han; Yu Zhao 010 (Softw. Test. Verification Reliab., 2022)

btllib: A C++ library with Python interface for efficient genomic sequence processing. - Vladimir Nikolic; Parham Kazemi; Lauren Coombe; Johnathan Wong; Amirhossein Afshinfard; Justin Chu; René L. Warren; Inanç Birol (J. Open Source Softw., 2022)