Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems. - Hans-Michael Kaltenbach; Simona Constantinescu; Justin Feigelman; Jörg Stelling (WABI, 2011)

Multiscale stochastic simulations of chemical reactions with regulated scale separation. - Petros Koumoutsakos; Justin Feigelman (J. Comput. Phys., 2013)

MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data. - Justin Feigelman; Fabian J. Theis; Carsten Marr (BMC Bioinform., 2014)

Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy. - Michael K. Strasser; Justin Feigelman; Fabian J. Theis; Carsten Marr (BMC Syst. Biol., 2015)

LNA++: Linear Noise Approximation with First and Second Order Sensitivities. - Justin Feigelman; Daniel Weindl; Fabian J. Theis; Carsten Marr; Jan Hasenauer (CMSB, 2018)