A system for interactive molecular dynamics simulation. - John E. Stone; Justin Gullingsrud; Klaus Schulten (SI3D, 2001)

A scalable parallel framework for analyzing terascale molecular dynamics simulation trajectories. - Tiankai Tu; Charles A. Rendleman; David W. Borhani; Ron O. Dror; Justin Gullingsrud; Morten Ø. Jensen; John L. Klepeis; Paul Maragakis; Patrick J. Miller; Kate A. Stafford; David E. Shaw (SC, 2008)

Anton 3: twenty microseconds of molecular dynamics simulation before lunch. - David E. Shaw; Peter J. Adams; Asaph Azaria; Joseph A. Bank; Brannon Batson; Alistair Bell; Michael Bergdorf; Jhanvi Bhatt; J. Adam Butts; Timothy Correia; Robert M. Dirks; Ron O. Dror; et al. (SC, 2021)