TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees. - Steve Woolley; Justin Johnson 002; Matthew J. Smith; Keith A. Crandall; David A. McClellan (Bioinform., 2003)

Aggressive assembly of pyrosequencing reads with mates. - Jason R. Miller; Arthur L. Delcher; Sergey Koren; Eli Venter; Brian Walenz; Anushka Brownley; Justin Johnson 002; Kelvin Li; Clark M. Mobarry; Granger G. Sutton (Bioinform., 2008)