Planteome annotation wiki: a semantic application for the community curation of plant genotypes and phenotypes. - Justin Preece; Justin Elser; Pankaj Jaiswal (SWAT4LS, 2011)

QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice. - Shuchi Smita; Sangram Keshari Lenka; Amit Katiyar; Pankaj Jaiswal; Justin Preece; Kailash Chander Bansal (Database J. Biol. Databases Curation, 2011)

AISO: Annotation of Image Segments with Ontologies. - Nikhil Lingutla; Justin Preece; Sinisa Todorovic; Laurel Cooper; Laura Moore; Pankaj Jaiswal (J. Biomed. Semant., 2014)

Gramene 2013: comparative plant genomics resources. - Marcela K. Monaco; Joshua C. Stein; Sushma Naithani; Sharon Wei; Palitha Dharmawardhana; Sunita Kumari; Vindhya Amarasinghe; Ken Youens-Clark; James Thomason; Justin Preece; Shiran Pasternak; Andrew Olson; et al. (Nucleic Acids Res., 2014)

The Planteome Project. - Laurel Cooper; Austin Meier; Justin Elser; Justin Preece; Xu Xu; Ryan Kitchen; Botong Qu; Eugene Zhang; Sinisa Todorovic; Pankaj Jaiswal; Marie-Angélique Laporte; Elizabeth Arnaud; et al. (ICBO/BioCreative, 2016)

Plant Image Segmentation and Annotation with Ontologies in BisQue. - Justin Preece; Justin Elser; Pankaj Jaiswal; Kristian Kvilekval; Dmitry V. Fedorov; B. S. Manjunath; Ryan Kitchen; Xu Xu; Dmitrios Trigkakis; Sinisa Todorovic; Seth Carbon (ICBO/BioCreative, 2016)

Gramene 2016: comparative plant genomics and pathway resources. - Marcela K. Tello-Ruiz; Joshua C. Stein; Sharon Wei; Justin Preece; Andrew Olson; Sushma Naithani; Vindhya Amarasinghe; Palitha Dharmawardhana; Yinping Jiao; Joseph Mulvaney; Sunita Kumari; Kapeel Chougule; et al. (Nucleic Acids Res., 2016)

Plant Reactome: a resource for plant pathways and comparative analysis. - Sushma Naithani; Justin Preece; Peter D'Eustachio; Parul Gupta; Vindhya Amarasinghe; Palitha Dharmawardhana; Guanming Wu; Antonio Fabregat; Justin Elser; Joel Weiser; Maria Keays; Alfonso Muñoz-Pomer Fuentes; et al. (Nucleic Acids Res., 2017)

OOPS: The Ontology of Plant Stress, A Semi-Automated Standardization Methodology. - Austin Meier; Marie-Angélique Laporte; Justin Elser; Laurel Cooper; Justin Preece; Pankaj Jaiswal; Jorrit H. Poelen (ICBO, 2018)

Planteome & BisQue: Automating Image Annotation with Ontologies using Deep-Learning Networks. - Dimitrios Trigkakis; Justin Preece; Austin Meier; Justin Elser; Kristian Kvilekval; Dmitry V. Fedorov; B. S. Manjunath; Pankaj Jaiswal; Sinisa Todorovic (ICBO, 2018)

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. - Laurel Cooper; Austin Meier; Marie-Angélique Laporte; Justin Elser; Chris Mungall; Brandon T. Sinn; Dario Cavaliere; Seth Carbon; Nathan A. Dunn; Barry Smith 001; Botong Qu; Justin Preece; et al. (Nucleic Acids Res., 2018)

Expression Atlas: gene and protein expression across multiple studies and organisms. - Irene Papatheodorou; Nuno A. Fonseca; Maria Keays; Y. Amy Tang; Elisabet Barrera; Wojciech Bazant; Melissa L. Burke; Anja Füllgrabe; Alfonso Muñoz-Pomer Fuentes; Nancy George; Laura Huerta; Satu Koskinen; et al. (Nucleic Acids Res., 2018)

Gramene 2018: unifying comparative genomics and pathway resources for plant research. - Marcela K. Tello-Ruiz; Sushma Naithani; Joshua C. Stein; Parul Gupta; Michael Campbell; Andrew Olson; Sharon Wei; Justin Preece; Matthew J. Geniza; Yinping Jiao; Young Koung Lee; Bo Wang 117; et al. (Nucleic Acids Res., 2018)

Involving community in genes and pathway curation. - Sushma Naithani; Parul Gupta; Justin Preece; Priyanka Garg; Valerie Fraser; Lillian K. Padgitt-Cobb; Matthew Martin; Kelly Vining; Pankaj Jaiswal (Database J. Biol. Databases Curation, 2019)

Ensembl Genomes 2020 - enabling non-vertebrate genomic research. - Kevin L. Howe; Bruno Contreras-Moreira; Nishadi De Silva; Gareth Maslen; Wasiu A. Akanni; James E. Allen; Jorge Álvarez-Jarreta; Matthieu Barba; Dan M. Bolser; Lahcen Cambell; Manuel Carbajo; Marc Chakiachvili; et al. (Nucleic Acids Res., 2020)

Plant Reactome: a knowledgebase and resource for comparative pathway analysis. - Sushma Naithani; Parul Gupta; Justin Preece; Peter D'Eustachio; Justin Elser; Priyanka Garg; Daemon A. Dikeman; Jason Kiff; Justin Cook; Andrew Olson; Sharon Wei; Marcela K. Tello-Ruiz; et al. (Nucleic Acids Res., 2020)

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. - Marcela K. Tello-Ruiz; Sushma Naithani; Parul Gupta; Andrew Olson; Sharon Wei; Justin Preece; Yinping Jiao; Bo Wang 117; Kapeel Chougule; Priyanka Garg; Justin Elser; Sunita Kumari; et al. (Nucleic Acids Res., 2021)

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. - Andrew D. Yates; James E. Allen; M. Ridwan Amode; Andrey G. Azov; Matthieu Barba; Andrés Becerra; Jyothish Bhai; Lahcen I. Campbell; Manuel Carbajo Martinez; Marc Chakiachvili; Kapeel Chougule; Mikkel B. Christensen; et al. (Nucleic Acids Res., 2022)