A Block Model Suitable for Sparse Graphs. - Juuso A. Parkkinen; Janne Sinkkonen; Ádám Gyenge; Samuel Kaski (MLG/SRL@ILP, 2009)

Graph visualization with latent variable models. - Juuso A. Parkkinen; Kristian Nybo; Jaakko Peltonen; Samuel Kaski (MLG@KDD, 2010)

Searching for functional gene modules with interaction component models. - Juuso A. Parkkinen; Samuel Kaski (BMC Syst. Biol., 2010)

Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs. - Suleiman A. Khan; Ali Faisal; John Mpindi; Juuso A. Parkkinen; Tuomo Kalliokoski; Antti Poso; Olli-P. Kallioniemi; Krister Wennerberg; Samuel Kaski (BMC Bioinform., 2012)

Probabilistic drug connectivity mapping. - Juuso A. Parkkinen; Samuel Kaski (BMC Bioinform., 2014)

Probabilistic components of molecular interactions and drug responses ; Solutason lääkevasteiden ja molekyylivuorovaikutusten tilastollisia komponentteja. - Juuso A. Parkkinen (2014)