R3D-BLAST: a search tool for similar RNA 3D substructures. - Yun-Chen Liu; Chung-Han Yang; Kun-Tze Chen; Jyun-Rong Wang; Mei-Ling Cheng; Jen-Chun Chung; Hsien-Tai Chiu; Chin Lung Lu (Nucleic Acids Res., 2011)

Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes. - Yerukala Sathipati Srinivasulu; Jyun-Rong Wang; Kai-Ti Hsu; Ming-Ju Tsai; Phasit Charoenkwan; Wen-Lin Huang; Hui-Ling Huang; Shinn-Ying Ho (BMC Bioinform., 2015)

ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives. - Jyun-Rong Wang; Wen-Lin Huang; Ming-Ju Tsai; Kai-Ti Hsu; Hui-Ling Huang; Shinn-Ying Ho (Bioinform., 2017)

GREMA: modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem. - Ming-Ju Tsai; Jyun-Rong Wang; Shinn-Jang Ho; Li-Sun Shu; Wen-Lin Huang; Shinn-Ying Ho (Bioinform., 2020)