A Biological Named Entity Recognizer. - Meenakshi Narayanaswamy; K. E. Ravikumar; K. Vijay-Shanker (Pacific Symposium on Biocomputing, 2003)

Beyond the clause: extraction of phosphorylation information from medline abstracts. - Meenakshi Narayanaswamy; K. E. Ravikumar; K. Vijay-Shanker (ISMB (Supplement of Bioinformatics), 2005)

Literature mining and database annotation of protein phosphorylation using a rule-based system. - Zhang-Zhi Hu; Meenakshi Narayanaswamy; K. E. Ravikumar; K. Vijay-Shanker; Cathy H. Wu (Bioinform., 2005)

An online literature mining tool for protein phosphorylation. - X. Yuan; Zhang-Zhi Hu; H. T. Wu; Manabu Torii; Meenakshi Narayanaswamy; K. E. Ravikumar; K. Vijay-Shanker; Cathy H. Wu (Bioinform., 2006)

Information Extraction of Protein Phosphorylation from Biomedical Literature. - Meenakshi Narayanaswamy; K. E. Ravikumar; Zhang-Zhi Hu; K. Vijay-Shanker; Cathy H. Wu (Information Retrieval in Biomedicine, 2009)

From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text. - Haibin Liu; Ravikumar Komandur Elayavilli; Karin Verspoor (BioNLP@ACL (Shared Task), 2011)

Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature. - K. E. Ravikumar; Haibin Liu; Judith D. Cohn; Michael E. Wall; Karin Verspoor (ICMLA (2), 2011)

Asthma Status Identification with Natural Language Processing. - Stephen T. Wu; Young J. Juhn; Sunghwan Sohn; Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Siddhartha Jonnalagadda; Hongfang Liu (AMIA, 2012)

Three Questions About Clinical Information Retrieval. - Stephen T. Wu; James J. Masanz; K. E. Ravikumar; Hongfang Liu (TREC, 2012)

Literature mining of protein-residue associations with graph rules learned through distant supervision. - K. E. Ravikumar; Haibin Liu; Judith D. Cohn; Michael E. Wall; Karin Verspoor (J. Biomed. Semant., 2012)

Multi-Objective Optimization for Clustering of Medical Publications. - Asif Ekbal; Sriparna Saha 001; Diego Mollá; K. E. Ravikumar (ALTA, 2013)

Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. - Sunghwan Sohn; Kavishwar B. Wagholikar; Dingcheng Li; Siddhartha Jonnalagadda; Cui Tao; Ravikumar Komandur Elayavilli; Hongfang Liu (J. Am. Medical Informatics Assoc., 2013)

NLP enhances Quality Care Measures in Heart Failure. - Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Hongfang Liu (AMIA, 2014)

Challenges in adapting text mining for full text articles to assist pathway curation. - K. E. Ravikumar; Kavishwar B. Wagholikar; Hongfang Liu (BCB, 2014)

Towards Pathway Curation Through Literature Mining - A Case Study Using PharmGKB. - K. E. Ravikumar; Kavishwar B. Wagholikar; Hongfang Liu (Pacific Symposium on Biocomputing, 2014)

Evaluation of the accuracy of CDS for cervical cancer screening and surveillance. - Kathy L. MacLaughlin; Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Marianne R. Scheitel; Hongfang Liu; Rajeev Chaudhry (AMIA, 2015)

Natural Language Processing facilitates delivery of individualized recommendations at the point of care. - K. E. Ravikumar; Rajeev Chaudhry; James J. Masanz; Joshua J. Pankratz; Jane L. Shellum; Steve G. Peters; Ronald A. Hankey; Daniel J. Cronk; Jennifer J. Boysen; Kristin Pavek; Robert Roden; Hongfang Liu (AMIA, 2015)

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository. - Dingcheng Li; Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Yanshan Wang; Saeed Mehrabi 003; Yue Yu; Sunghwan Sohn; Yanpeng Li; Naveed Afzal; Hongfang Liu (BCB, 2015)

A new method for prioritizing drug repositioning candidates extracted by literature-based discovery. - Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Dingcheng Li; Rashmi Prasad; Hongfang Liu (BIBM, 2015)

A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing. - Dingcheng Li; Majid Rastegar-Mojarad; Yanpeng Li; Sunghwan Sohn; Saeed Mehrabi 003; Ravikumar Komandur Elayavilli; Yue Yu; Hongfang Liu (MedInfo, 2015)

Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature. - Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Dingcheng Li; Hongfang Liu (MedInfo, 2015)

Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. - Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Dingcheng Li; Jean-Pierre A. Kocher; Hongfang Liu (BMC Bioinform., 2015)

The CHEMDNER corpus of chemicals and drugs and its annotation principles. - Martin Krallinger; Obdulia Rabal; Florian Leitner; Miguel Vazquez; David Salgado; Zhiyong Lu; Robert Leaman; Yanan Lu; Donghong Ji; Daniel M. Lowe; Roger A. Sayle; Riza Theresa Batista-Navarro; et al. (J. Cheminformatics, 2015)

Prioritizing Adverse Drug Reaction and Drug Repositioning Candidates Generated by Literature-Based Discovery. - Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Liwei Wang 010; Rashmi Prasad; Hongfang Liu (BCB, 2016)

MutD - A PubMed Scale Resource for Protein Mutation-Disease Relations through Bio-Medical Literature Mining. - Ravikumar Komandur Elayavilli; Majid Rastegar-Mojarad; Hongfang Liu (ICBO/BioCreative, 2016)

An Ensemble Model of Clinical Information Extraction and Information Retrieval for Clinical Decision Support. - Yanshan Wang; Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Sijia Liu 002; Hongfang Liu (TREC, 2016)

BELTracker: evidence sentence retrieval for BEL statements. - Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Hongfang Liu (Database J. Biol. Databases Curation, 2016)

Erratum to: Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. - Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Dingcheng Li; Jean-Pierre A. Kocher; Hongfang Liu (BMC Bioinform., 2016)

Leveraging both Structured and Unstructured Data for Precision Information Retrieval. - Yanshan Wang; Ravikumar Komandur Elayavilli; Majid Rastegar-Mojarad; Hongfang Liu (TREC, 2017)

BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences. - K. E. Ravikumar; Majid Rastegar-Mojarad; Hongfang Liu (Database J. Biol. Databases Curation, 2017)

Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts. - Yanshan Wang; Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Hongfang Liu (Database J. Biol. Databases Curation, 2017)

Identification of Genetic Causality Statements in Medline Abstracts Leveraging Distant Supervision. - Liwei Wang 010; Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Yanshan Wang; Hongfang Liu (ICHI Workshops, 2018)

Improving the Accuracy of a Clinical Decision Support System for Cervical Cancer Screening and Surveillance. - K. E. Ravikumar; Kathy L. MacLaughlin; Marianne R. Scheitel; Maya Kessler; Kavishwar B. Wagholikar; Hongfang Liu; Rajeev Chaudhry (Appl. Clin. Inform., 2018)

Extracting chemical-protein relations using attention-based neural networks. - Sijia Liu 002; Feichen Shen; Ravikumar Komandur Elayavilli; Yanshan Wang; Majid Rastegar-Mojarad; Vipin Chaudhary; Hongfang Liu (Database J. Biol. Databases Curation, 2018)

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track. - Sumit Madan; Justyna Szostak; Ravikumar Komandur Elayavilli; Richard Tzong-Han Tsai; Mehdi Ali; Longhua Qian; Majid Rastegar-Mojarad; Julia Hoeng; Juliane Fluck (Database J. Biol. Databases Curation, 2019)