The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button. - Morris A. Swertz; Martijn Dijkstra; Tomasz Adamusiak; K. Joeri van der Velde; Alexandros Kanterakis; Erik T. Roos; Joris Lops; Gudmundur A. Thorisson; Danny Arends; George Byelas; Juha Muilu; Anthony J. Brookes; et al. (BMC Bioinform., 2010)

OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript. - Tomasz Adamusiak; Tony Burdett; Natalja Kurbatova; K. Joeri van der Velde; Niran Abeygunawardena; Despoina Antonakaki; Misha Kapushesky; Helen E. Parkinson; Morris A. Swertz (BMC Bioinform., 2011)

Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs. - Caroline Durrant; Morris A. Swertz; Rudi Alberts; Danny Arends; Steffen Möller; Richard Mott; Pjotr Prins; K. Joeri van der Velde; Ritsert C. Jansen; Klaus Schughart (Briefings Bioinform., 2012)

xQTL workbench: a scalable web environment for multi-level QTL analysis. - Danny Arends; K. Joeri van der Velde; Pjotr Prins; Karl W. Broman; Steffen Möller; Ritsert C. Jansen; Morris A. Swertz (Bioinform., 2012)

WormQTL - public archive and analysis web portal for natural variation data in Caenorhabditis spp. - L. Basten Snoek; K. Joeri van der Velde; Danny Arends; Yang Li 036; Antje Beyer; Mark Elvin; Jasmin Fisher; Alex Hajnal; Michael O. Hengartner; Gino B. Poulin; Miriam Rodriguez; Tobias Schmid; et al. (Nucleic Acids Res., 2013)

WormQTLHD - a web database for linking human disease to natural variation data in C. elegans. - K. Joeri van der Velde; Mark de Haan; Konrad Zych; Danny Arends; L. Basten Snoek; Jan E. Kammenga; Ritsert C. Jansen; Morris A. Swertz; Yang Li 036 (Nucleic Acids Res., 2014)

SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data. - Chao Pang; Annet Sollie; Anna Sijtsma; Dennis Hendriksen; Bart Charbon; Mark de Haan; Tommy de Boer; Fleur D. L. Kelpin; Jonathan Jetten; K. Joeri van der Velde; Nynke Smidt; Rolf Sijmons; et al. (Database J. Biol. Databases Curation, 2015)

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains. - Konrad Zych; Yang Li 036; K. Joeri van der Velde; Ronny Joosen; Wilco Ligterink; Ritsert C. Jansen; Danny Arends (BMC Bioinform., 2015)

BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing. - Chao Pang; Dennis Hendriksen; Martijn Dijkstra; K. Joeri van der Velde; Joël Kuiper; Hans L. Hillege; Morris A. Swertz (J. Am. Medical Informatics Assoc., 2015)

MOLGENIS/OMX for multi-omics and personalized medicine. - Morris A. Swertz; K. Joeri van der Velde (J. Clin. Bioinform., 2015)

MOLGENIS/connect: a system for semi-automatic integration of heterogeneous phenotype data with applications in biobanks. - Chao Pang; David van Enckevort; Mark de Haan; Fleur D. L. Kelpin; Jonathan Jetten; Dennis Hendriksen; Tommy de Boer; Bart Charbon; Erwin Winder; K. Joeri van der Velde; Dany Doiron; Isabel Fortier; et al. (Bioinform., 2016)

Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation. - Shuang Li; K. Joeri van der Velde; Morris A. Swertz (eScience, 2018)

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians. - K. Joeri van der Velde; Floris Imhann; Bart Charbon; Chao Pang; David van Enckevort; Mariska Slofstra; Ruggero Barbieri; Rudi Alberts; Dennis Hendriksen; Fleur D. L. Kelpin; Mark de Haan; Tommy de Boer; et al. (Bioinform., 2019)

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. - Rajaram Kaliyaperumal; Mark D. Wilkinson; Pablo Alarcón Moreno; Nirupama Benis; Ronald Cornet; Bruna dos Santos Vieira; Michel Dumontier; César Henrique Bernabé; Annika Jacobsen; Clémence M. A. Le Cornec; Mario Prieto Godoy; Núria Queralt-Rosinach; et al. (J. Biomed. Semant., 2022)

Blockchain for Genomics: A Systematic Literature Review. - Mohammed Alghazwi; Fatih Turkmen; K. Joeri van der Velde; Dimka Karastoyanova (Distributed Ledger Technol. Res. Pract., 2022)

Surveyed common data access policies preferences amongst European Reference Networks. - Alberto Cámara Ballesteros; Nirupama Benis; César Henrique Bernabé; Inés de Oliveira Coelho; Clémence M. A. Le Cornec; Aylin Demir; Bruna dos Santos Vieira; Jose Antonio Ramírez; K. Joeri van der Velde; Shuxin Zhang; Ronald Cornet; Annika Jacobsen; et al. (SWAT4HCLS, 2023)

Ten quick tips for building FAIR workflows. - Casper de Visser; Lennart F. Johansson; Purva Kulkarni; Hailiang Mei; Pieter B. T. Neerincx; K. Joeri van der Velde; Peter Horvatovich; Alain J. van Gool; Morris A. Swertz; Peter A. C. 't Hoen; Anna Niehues (PLoS Comput. Biol., 2023)

A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR. - Philip van Damme; Pablo Alarcón Moreno; César Henrique Bernabé; Alberto Cámara Ballesteros; Clémence M. A. Le Cornec; Bruna dos Santos Vieira; K. Joeri van der Velde; Shuxin Zhang; Claudio Carta; Ronald Cornet; Peter A. C. 't Hoen; Annika Jacobsen; et al. (Data Sci. J., 2023)

FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis. - Xiaofeng Liao; Yuliia Orlova; Cenna Doornbos; Anna Niehues; Casper de Visser; Junda Huang; Thomas H. A. Ederveen; Purva Kulkarni; K. Joeri van der Velde; Morris A. Swertz; Martin Brandt; Alain J. van Gool; et al. (SWAT4HCLS, 2024)

FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis. - Xiaofeng Liao; Thomas H. A. Ederveen; Anna Niehues; Casper de Visser; Junda Huang; Firdaws Badmus; Cenna Doornbos; Yuliia Orlova; Purva Kulkarni; K. Joeri van der Velde; Morris A. Swertz; Martin Brandt; et al. (J. Biomed. Semant., 2024)

An exploratory study combining Virtual Reality and Semantic Web for life science research using Graph2VR. - Alexander Kellmann; Sander van den Hoek; Max Postema; W. T. Kars Maassen; Brenda S. Hijmans; Marije van der Geest; K. Joeri van der Velde; Esther van Enckevort; Morris A. Swertz (Database J. Biol. Databases Curation, 2025)