Discover regulatory DNA elements using chromatin signatures and artificial neural network. - Hiram A. Firpi; Duygu Ucar; Kai Tan 001 (Bioinform., 2010)

Discover Protein Complexes in Protein-Protein Interaction Networks Using Parametric Local Modularity. - Jongkwang Kim; Kai Tan 001 (BMC Bioinform., 2010)

Discovering distal regulatory elements by integrating multiple types of chromatin state maps. - Li Teng; Kai Tan 001 (BIBM, 2012)

Modeling disease progression using dynamics of pathway connectivity. - Xiaoke Ma 001; Long Gao; Kai Tan 001 (Bioinform., 2014)

4DGenome: a comprehensive database of chromatin interactions. - Li Teng; Bing He; Jiahui Wang; Kai Tan 001 (Bioinform., 2015)

Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks. - Xiaoke Ma 001; Long Gao; Georgios Karamanlidis; Peng Gao; Chi Fung Lee; Lorena Garcia-Menendez; Rong Tian; Kai Tan 001 (PLoS Comput. Biol., 2015)

EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types. - Tianshun Gao; Bing He; Sheng Liu; Heng Zhu; Kai Tan 001; Jiang Qian (Bioinform., 2016)