Extraction of protein-protein interactions using natural language processing based pattern matching. - Kaixian Yu; Tingting Zhao; Peixiang Zhao 001; Jinfeng Zhang (BIBM, 2017)

Automatic extraction of protein-protein interactions using grammatical relationship graph. - Kaixian Yu; Pei-Yau Lung; Tingting Zhao; Peixiang Zhao 001; Yan-Yuan Tseng; Jinfeng Zhang (BMC Medical Informatics Decis. Mak., 2018)

The evolutionary history of 2,658 cancers. - Moritz Gerstung; Clemency Jolly; Ignaty Leshchiner; Stefan C. Dentro; Santiago Gonzalez; Thomas J. Mitchell; Yulia Rubanova; Pavana Anur; Kaixian Yu; Maxime Tarabichi; Amit G. Deshwar; Jeff Wintersinger; et al. (Nat., 2020)

Alzheimer's disease knowledge graph enhances knowledge discovery and disease prediction. - Yue Yang; Kaixian Yu; Shan Gao; Sheng Yu; Di Xiong; Chuanyang Qin; Huiyuan Chen; Jiarui Tang; Niansheng Tang; Hongtu Zhu (Comput. Biol. Medicine, 2025)

A comprehensive large-scale biomedical knowledge graph for AI-powered data-driven biomedical research. - Yuan Zhang; Xin Sui; Feng Pan; Kaixian Yu; Keqiao Li; Shubo Tian; Arslan Erdengasileng; Qing Han; Wanjing Wang; Jianan Wang; Jian Wang; Donghu Sun; et al. (Nat. Mac. Intell., 2025)