GenoHoption: Bridging Gene Network Graphs and Single-Cell Foundation Models. - Jiabei Cheng; Jiachen Li; Kaiyuan Yang 009; Hongbin Shen; Ye Yuan (BIBM, 2024)

GexMolGen: cross-modal generation of hit-like molecules via large language model encoding of gene expression signatures. - Jiabei Cheng; Xiaoyong Pan; Yi Fang; Kaiyuan Yang 009; Yiming Xue; Qingran Yan; Ye Yuan (Briefings Bioinform., 2024)

Predicting transcriptional changes induced by molecules with MiTCP. - Kaiyuan Yang 009; Jiabei Cheng; Shenghao Cao; Xiaoyong Pan; Hong-Bin Shen; Ye Yuan (Briefings Bioinform., 2024)