Motif Detection in Protein Sequences. - Yuan Gao; Kalai Mathee; Giri Narasimhan; Xuning Wang (SPIRE/CRIWG, 1999)

Mining Protein Sequences for Motifs. - Giri Narasimhan; Changsong Bu; Yuan Gao; Xuning Wang; Ning Xu; Kalai Mathee (J. Comput. Biol., 2002)

Training Set Design for Pattern Discovery with Applications to protein Motif Detection. - Yanli Sun; Zhengyue Deng; Giri Narasimhan; Kalai Mathee (Advances in Bioinformatics and Its Applications, 2005)

Querying a Database of regulatory Elements. - Chengyong Yang; Erliang Zeng; Kalai Mathee; Giri Narasimhan (Advances in Bioinformatics and Its Applications, 2005)

Clustering Using Adaptive Self-organizing Maps (ASOM) and Applications. - Yong Wang; Chengyong Yang; Kalai Mathee; Giri Narasimhan (International Conference on Computational Science (2), 2005)

A Functional Network of Yeast Genes Using Gene Ontology Information. - Erliang Zeng; Giri Narasimhan; Lisa Schneper; Kalai Mathee (BIBM, 2008)

Effects of Various Alpha-1 Antitrypsin Supplement Dosages on the Lung Microbiome and Metabolome. - Trevor Cickovski; Astrid Manuel; Kalai Mathee; Michael Campos; Giri Narasimhan (ICCABS, 2019)

So you think you can PLS-DA? - Daniel Ruiz-Perez; Haibin Guan; Purnima Madhivanan; Kalai Mathee; Giri Narasimhan (BMC Bioinform., 2020)

Evaluating protein binding interfaces with transformer networks. - Vitalii Stebliankin; Azam Shirali; Prabin Baral; Jimeng Shi; Prem Chapagain; Kalai Mathee; Giri Narasimhan (Nat. Mac. Intell., 2023)