BISEN: Biochemical Simulation Environment. - Joep Vanlier; Fan Wu 002; Feng Qi; Kalyan C. Vinnakota; Yu Han; Ranjan K. Dash; F. Yang; Daniel A. Beard (Bioinform., 2009)

Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats. - Michael A. Moxley; Kalyan C. Vinnakota; Jason N. Bazil; Nathan R. Qi; Daniel A. Beard (PLoS Comput. Biol., 2018)

A simplified metabolic network reconstruction to promote understanding and development of flux balance analysis tools. - Kristopher D. Rawls; Bonnie V. Dougherty; Edik M. Blais; Ethan Stancliffe; Glynis L. Kolling; Kalyan C. Vinnakota; Venkat R. Pannala; Anders Wallqvist; Jason A. Papin (Comput. Biol. Medicine, 2019)

Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database. - Ashley Clayton; Mialy M. DeFelice; Brynn Zalmanek; Jay Hodgson; Caroline Morin; Stockard Simon; Julie A. Bletz; James A. Eddy; Milen Nikolov; Jineta Banerjee; Kalyan C. Vinnakota; Marco Marasca; et al. (Database J. Biol. Databases Curation, 2022)