PCAfold: Python software to generate, analyze and improve PCA-derived low-dimensional manifolds. - Kamila Zdybal; Elizabeth Armstrong; Alessandro Parente; James C. Sutherland (SoftwareX, 2020)

Advancing Reacting Flow Simulations with Data-Driven Models. - Kamila Zdybal; Giuseppe D'Alessio; Gianmarco Aversano; Mohammad Rafi Malik; Axel Coussement; James C. Sutherland; Alessandro Parente (CoRR, 2022)

PCAfold 2.0 - Novel tools and algorithms for low-dimensional manifold assessment and optimization. - Kamila Zdybal; Elizabeth Armstrong; Alessandro Parente; James C. Sutherland (SoftwareX, 2023)

Improving reduced-order models through nonlinear decoding of projection-dependent outputs. - Kamila Zdybal; Alessandro Parente; James C. Sutherland (Patterns, 2023)

pykitPIV: A framework for flexible and reproducible virtual training of machine learning models in optical velocimetry. - Kamila Zdybal; Claudio Mucignat; Ivan Lunati (SoftwareX, 2025)