AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. - Surendra Kumar; Åsmund Skjæveland; Russell J. S. Orr; Pål Enger; Torgeir Ruden; Bjørn-Helge Mevik; Fabien Burki; Andreas Botnen; Kamran Shalchian-Tabrizi (BMC Bioinform., 2009)

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. - Surendra Kumar; Tor Carlsen; Bjørn-Helge Mevik; Pål Enger; Rakel Blaalid; Kamran Shalchian-Tabrizi; Havard Kauserud (BMC Bioinform., 2011)

BLAST output visualization in the new sequencing era. - Ralf Stefan Neumann; Surendra Kumar; Kamran Shalchian-Tabrizi (Briefings Bioinform., 2014)

BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. - Ralf Stefan Neumann; Surendra Kumar; Thomas Hendricus Haverkamp; Kamran Shalchian-Tabrizi (BMC Bioinform., 2014)