A melody retrieval system on parallelized computers. - Tomonari Sonoda; Toshiya Ikenaga; Kana Shimizu; Yoichi Muraoka (IWEC, 2002)

The Design Method of a Melody Retrieval System on Parallelized Computers. - Tomonari Sonoda; Toshiya Ikenaga; Kana Shimizu; Yoichi Muraoka (WEDELMUSIC, 2002)

Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder. - Kana Shimizu; Yoichi Muraoka; Shuichi Hirose; Tamotsu Noguchi (CIBCB, 2005)

Angle: a Sequencing Errors Resistant Program for Predicting Protein Coding Regions in Unfinished Cdna. - Kana Shimizu; Jun Adachi; Yoichi Muraoka (J. Bioinform. Comput. Biol., 2006)

POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions. - Shuichi Hirose; Kana Shimizu; Satoru Kanai; Yutaka Kuroda; Tamotsu Noguchi (Bioinform., 2007)

POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. - Kana Shimizu; Shuichi Hirose; Tamotsu Noguchi (Bioinform., 2007)

Predicting mostly disordered proteins by using structure-unknown protein data. - Kana Shimizu; Yoichi Muraoka; Shuichi Hirose; Kentaro Tomii; Tamotsu Noguchi (BMC Bioinform., 2007)

POODLE-I: Disordered Region Prediction by Integrating POODLE Series and Structural Information Predictors Based on a Workflow Approach. - Shuichi Hirose; Kana Shimizu; Tamotsu Noguchi (Silico Biol., 2010)

SlideSort: all pairs similarity search for short reads. - Kana Shimizu; Koji Tsuda (Bioinform., 2011)

SAHG, a comprehensive database of predicted structures of all human proteins. - Chie Motono; Junichi Nakata; Ryotaro Koike; Kana Shimizu; Matsuyuki Shirota; Takayuki Amemiya; Kentaro Tomii; Nozomi Nagano; Naofumi Sakaya; Kiyotaka Misoo; Miwa Sato; Akinori Kidera; et al. (Nucleic Acids Res., 2011)

PoSSuM: a database of similar protein-ligand binding and putative pockets. - Jun-Ichi Ito; Yasuo Tabei; Kana Shimizu; Koji Tsuda; Kentaro Tomii (Nucleic Acids Res., 2012)

Reference-free prediction of rearrangement breakpoint reads. - Edward Wijaya; Kana Shimizu; Kiyoshi Asai; Michiaki Hamada (Bioinform., 2014)

On Limitations and Alternatives of Privacy-Preserving Cryptographic Protocols for Genomic Data. - Tadanori Teruya; Koji Nuida; Kana Shimizu; Goichiro Hanaoka (IWSEC, 2015)

Privacy-preserving search for chemical compound databases. - Kana Shimizu; Koji Nuida; Hiromi Arai; Shigeo Mitsunari; Nuttapong Attrapadung; Michiaki Hamada; Koji Tsuda; Takatsugu Hirokawa; Jun Sakuma; Goichiro Hanaoka; Kiyoshi Asai (BMC Bioinform., 2015)

Privacy-preserving string search for genome sequences with FHE bootstrapping optimization. - Yu Ishimaki; Hiroki Imabayashi; Kana Shimizu; Hayato Yamana (IEEE BigData, 2016)

Efficient privacy-preserving string search and an application in genomics. - Kana Shimizu; Koji Nuida; Gunnar Rätsch (Bioinform., 2016)

Differentially private Bayesian learning on distributed data. - Mikko A. Heikkilä; Eemil Lagerspetz; Samuel Kaski; Kana Shimizu; Sasu Tarkoma; Antti Honkela (NIPS, 2017)

Differentially Private Bayesian Learning on Distributed Data. - Mikko A. Heikkilä; Yusuke Okimoto; Samuel Kaski; Kana Shimizu; Antti Honkela (CoRR, 2017)

Efficient Two-level Homomorphic Encryption in Prime-order Bilinear Groups and A Fast Implementation in WebAssembly. - Nuttapong Attrapadung; Goichiro Hanaoka; Shigeo Mitsunari; Yusuke Sakai 001; Kana Shimizu; Tadanori Teruya (AsiaCCS, 2018)

Secure Division Protocol and Applications to Privacy-preserving Chi-squared Tests. - Hiraku Morita; Nuttapong Attrapadung; Satsuya Ohata; Koji Nuida; Shota Yamada 001; Kana Shimizu; Goichiro Hanaoka; Kiyoshi Asai (ISITA, 2018)

Simultaneous High-speed and Polarization-Independent Switching Operation of 2x2 Silicon Mach-Zehnder-Type Optical Switch. - Kana Shimizu; Tomohiro Shirai; Yuichi Matsushima; Hiroshi Ishikawa; Katsuyuki Utaka (PSC, 2018)

A playful tool for predicting protein-protein docking. - Keren Jiang; Di Zhang; Tsubasa Iino; Risa Kimura; Tatsuo Nakajima; Kana Shimizu; Masahito Ohue; Yutaka Akiyama (MUM, 2019)

An Efficient Private Evaluation of a Decision Graph. - Hiroki Sudo; Koji Nuida; Kana Shimizu (IACR Cryptol. ePrint Arch., 2019)

Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search for Bioinformatics. - Hiroki Sudo; Masanobu Jimbo; Koji Nuida; Kana Shimizu (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Differentially private cross-silo federated learning. - Mikko A. Heikkilä; Antti Koskela; Kana Shimizu; Samuel Kaski; Antti Honkela (CoRR, 2020)

Private Evaluation of a Decision Tree Based on Secret Sharing. - Mohammad Nabil Ahmed; Kana Shimizu (ICISC, 2022)

Efficient privacy-preserving variable-length substring match for genome sequence. - Yoshiki Nakagawa; Satsuya Ohata; Kana Shimizu (Algorithms Mol. Biol., 2022)

Efficient Colored de Bruijn Graph for Indexing Reads. - Nozomi Hasegawa; Kana Shimizu (J. Comput. Biol., 2023)

Enhancing Privacy Protection for Human Genome Synthesis Using Gradient Clipping. - Kohei Hashimoto; Kana Shimizu (BCB, 2024)

Efficient Privacy Preserving Range Query Using Segment Tree. - Shusuke Shirotake; Kana Shimizu (CISS, 2024)

Secure Full-Text Search Using Function Secret Sharing. - Tomoki Uchiyama; Kana Shimizu (WPES@CCS, 2024)