Detailed protein sequence alignment based on Spectral Similarity Score (SSS). - Kshitiz Gupta; Dina Thomas; S. V. Vidya; Kareenhalli V. Venkatesh; S. Ramakumar (BMC Bioinform., 2005)

Analysis of optimal phenotypic space using elementary modes as applied to Corynebacterium glutamicum. - Kalyan Gayen; Kareenhalli V. Venkatesh (BMC Bioinform., 2006)

A theoretical steady state analysis indicates that induction of Escherichia coli glnALG operon can display all-or-none behavior. - Vivek K. Mutalik; Kareenhalli V. Venkatesh (Biosyst., 2007)

Steady state approach to model gene regulatory networks - Simulation of microarray experiments. - Subodh B. Rawool; Kareenhalli V. Venkatesh (Biosyst., 2007)

Elementary Mode Analysis to Study the Preculturing Effect on the Metabolic State of Lactobacillus rhamnosus During Growth on Mixed Substrates. - Kalyan Gayen; Manish Gupta; Kareenhalli V. Venkatesh (Silico Biol., 2007)

Stochastic analysis of the GAL genetic switch in Saccharomyces cerevisiae: Modeling and experiments reveal hierarchy in glucose repression. - Vinay Prasad; Kareenhalli V. Venkatesh (BMC Syst. Biol., 2008)

A Steady State Model for the Transcriptional Regulation of Filamentous Growth in Saccharomyces cerevisiae. - Palakkad Krishnan Unni Vinod; Kareenhalli V. Venkatesh (Silico Biol., 2008)

Prediction by Promoter Logic in Bacterial Quorum Sensing. - Navneet Rai; Rajat Anand; Krishna Ramkumar; Varun Sreenivasan; Sugat Dabholkar; Kareenhalli V. Venkatesh; Mukund Thattai (PLoS Comput. Biol., 2012)

Constraints based analysis of extended cybernetic models. - Aravinda R. Mandli; Kareenhalli V. Venkatesh; Jayant M. Modak (Biosyst., 2015)