Dentritic [Ca2+] Dynamics in the Presence of Immobile Buffers and of Dyes. - Miguel Maravall; Zachary F. Mainen; Karel Svoboda (IWANN (1), 1999)

An Image Analysis Algorithm for Dendritic Spines. - Ingrid Y. Y. Koh; W. Brent Lindquist; Karen Zito; Esther A. Nimchinsky; Karel Svoboda (Neural Comput., 2002)

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale. - Jason W. Bohland; Caizhi Wu; Helen Barbas; Hemant Bokil; Mihail Bota; Hans C. Breiter; Hollis T. Cline; John C. Doyle 001; Peter J. Freed; Ralph J. Greenspan; Suzanne N. Haber; Michael Hawrylycz; et al. (PLoS Comput. Biol., 2009)

DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction. - Todd A. Gillette; Kerry M. Brown; Karel Svoboda; Yuan Liu; Giorgio A. Ascoli (Neuroinformatics, 2011)

The Past, Present, and Future of Single Neuron Reconstruction. - Karel Svoboda (Neuroinformatics, 2011)

Automated Tracking of Whiskers in Videos of Head Fixed Rodents. - Nathan G. Clack; Daniel H. O'Connor; Daniel Huber; Leopoldo T. Petreanu; Andrew Hires; Simon Peron; Karel Svoboda; Eugene W. Myers (PLoS Comput. Biol., 2012)

Robust neuronal dynamics in premotor cortex during motor planning. - Nuo Li; Kayvon Daie; Karel Svoboda; Shaul Druckmann (Nat., 2016)

Corrigendum: Robust neuronal dynamics in premotor cortex during motor planning. - Nuo Li; Kayvon Daie; Karel Svoboda; Shaul Druckmann (Nat., 2016)

Mechanisms underlying a thalamocortical transformation during active tactile sensation. - Diego A. Gutnisky; Jianing Yu; Samuel Andrew Hires; Minh-Son To; Michael Ross Bale; Karel Svoboda; David Golomb (PLoS Comput. Biol., 2017)

Dynamic cues for whisker-based object localization: An analytical solution to vibration during active whisker touch. - Roman Vaxenburg; Isis Wyche; Karel Svoboda; Alexander L. Efros; Samuel Andrew Hires (PLoS Comput. Biol., 2018)

Discrete attractor dynamics underlies persistent activity in the frontal cortex. - Hidehiko K. Inagaki; Lorenzo Fontolan; Sandro Romani; Karel Svoboda (Nat., 2019)

Response to "Fallacies of Mice Experiments". - Zhenyu Gao; Alyse M. Thomas; Michael N. Economo; Amada M. Abrego; Karel Svoboda; Chris I. De Zeeuw; Nuo Li (Neuroinformatics, 2019)

A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology. - Ziqiang Wei; Bei-Jung Lin; Tsai-Wen Chen; Kayvon Daie; Karel Svoboda; Shaul Druckmann (PLoS Comput. Biol., 2020)

Active learning of neural population dynamics using two-photon holographic optogenetics. - Andrew Wagenmaker; Lu Mi; Marton Rozsa; Matthew S. Bull; Karel Svoboda; Kayvon Daie; Matthew D. Golub; Kevin G. Jamieson (NeurIPS, 2024)