Computational protein design: The proteus software and selected applications. - Thomas Simonson; Thomas Gaillard; David Mignon; Marcel Schmidt am Busch; Anne Lopes; Najette Amara; Savvas Polydorides; Audrey Sedano; Karen Druart; Georgios Archontis (J. Comput. Chem., 2013)

Protein: Ligand binding free energies: A stringent test for computational protein design. - Karen Druart; Zoltan Palmai; Eyaz Omarjee; Thomas Simonson (J. Comput. Chem., 2016)

MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis. - Alexandre Maes; Xavier Martinez; Karen Druart; Benoist Laurent; Sean Guégan; Christophe H. Marchand; Stéphane D. Lemaire; Marc Baaden (J. Integr. Bioinform., 2018)

The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators. - Rachel Torchet; Karen Druart; Luis Checa Ruano; Alexandra Moine-Franel; Hélène Borges; Olivia Doppelt-Azeroual; Bryan Brancotte; Fabien Mareuil; Michael Nilges; Hervé Ménager; Olivier Sperandio (Bioinform., 2021)

Phylogenetic analysis of Harmonin homology domains. - Baptiste Colcombet-Cazenave; Karen Druart; Crystel Bonnet; Christine Petit; Olivier Sperandio; Julien Guglielmini; Nicolas Wolff (BMC Bioinform., 2021)

InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions. - Vincent Mallet; Luis Checa Ruano; Alexandra Moine-Franel; Michael Nilges; Karen Druart; Guillaume Bouvier; Olivier Sperandio (Bioinform., 2022)

MSclassifR: An R package for supervised classification of mass spectra with machine learning methods. - Alexandre Godmer; Yahia Benzerara; Emmanuelle Varon; Nicolas Veziris; Karen Druart; Renaud Mozet; Mariette Matondo; Alexandra Aubry; Quentin Giai Gianetto (Expert Syst. Appl., 2025)