A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes. - Daniel H. Haft; Jeremy D. Selengut; Emmanuel F. Mongodin; Karen E. Nelson (PLoS Comput. Biol., 2005)

Towards an Evolutionary Model of Animal-Associated Microbiomes. - Carl J. Yeoman; Nicholas Chia; Suleyman Yildirim; Margret E. Berg Miller; Angela Kent; Rebecca Stumpf; Steven R. Leigh; Karen E. Nelson; Bryan A. White; Brenda A. Wilson (Entropy, 2011)

Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. - Konstantinos Krampis; Tim Booth; Brad Chapman; Bela Tiwari; Mesude Bicak; Dawn Field; Karen E. Nelson (BMC Bioinform., 2012)

OMeta: an ontology-based, data-driven metadata tracking system. - Indresh Singh; Mehmet Kuscuoglu; Derek M. Harkins; Granger G. Sutton; Derrick E. Fouts; Karen E. Nelson (BMC Bioinform., 2019)

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach. - Josh L. Espinoza; Chris L. Dupont; Aubrie O'Rourke; Sinem Beyhan; Pavel Morales; Amy Spoering; Kirsten J. Meyer; Agnes P. Chan; Yongwook Choi; William C. Nierman; Kim Lewis; Karen E. Nelson (PLoS Comput. Biol., 2021)