MoCoLo: a testing framework for motif co-localization. - Qi Xu; Imee M. A del Mundo; Maha Zewail-Foote; Brian T. Luke; Karen M. Vasquez; Jeanne Kowalski (Briefings Bioinform., 2024)

ZSeeker: an optimized algorithm for Z-DNA detection in genomic sequences. - Guliang Wang; Ioannis Mouratidis; Kimonas Provatas; Nikol Chantzi; Michail Patsakis; Ilias Georgakopoulos-Soares; Karen M. Vasquez (Briefings Bioinform., 2025)