Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data. - Thomas S. Rask; Bent Petersen; Donald S. Chen; Karen P. Day; Anders Gorm Pedersen (BMC Bioinform., 2016)

Identifying functional groups among the diverse, recombining antigenic var genes of the malaria parasite Plasmodium falciparum from a local community in Ghana. - Mary M. Rorick; Edward B. Baskerville; Thomas S. Rask; Karen P. Day; Mercedes Pascual (PLoS Comput. Biol., 2018)

An accurate method for identifying recent recombinants from unaligned sequences. - Qian Feng; Kathryn E. Tiedje; Shazia Ruybal-Pesántez; Gerry Tonkin-Hill; Michael F. Duffy; Karen P. Day; Heejung Shim; Yao-Ban Chan (Bioinform., 2022)

Neutral vs. non-neutral genetic footprints of Plasmodium falciparum multiclonal infections. - Frédéric Labbé; Qixin He; Qi Zhan; Kathryn E. Tiedje; Dionne C. Argyropoulos; Mun Hua Tan; Anita Ghansah; Karen P. Day; Mercedes Pascual (PLoS Comput. Biol., 2023)