Optimal Serotype Compositions for Pneumococcal Conjugate Vaccination under Serotype Replacement. - Markku Nurhonen; Kari Auranen (PLoS Comput. Biol., 2014)

Revealing the True Incidence of Pandemic A(H1N1)pdm09 Influenza in Finland during the First Two Seasons - An Analysis Based on a Dynamic Transmission Model. - Mikhail Shubin; Artem Lebedev; Outi Lyytikäinen; Kari Auranen (PLoS Comput. Biol., 2016)

Methods for generating and evaluating synthetic longitudinal patient data: a systematic review. - Katariina Perkonoja; Kari Auranen; Joni Virta (CoRR, 2023)

Elementary methods provide more replicable results in microbial differential abundance analysis. - Juho Pelto; Kari Auranen; Janne V. Kujala; Leo Lahti (Briefings Bioinform., 2024)