Deep Transferable Compound Representation across Domains and Tasks for Low Data Drug Discovery. - Karim Abbasi; Antti Poso; Jahan B. Ghasemi; Massoud Amanlou; Ali Masoudi-Nejad (J. Chem. Inf. Model., 2019)

Transfer subspace learning via low-rank and discriminative reconstruction matrix. - Parvin Razzaghi; Parisa Razzaghi; Karim Abbasi (Knowl. Based Syst., 2019)

DeepCDA: deep cross-domain compound-protein affinity prediction through LSTM and convolutional neural networks. - Karim Abbasi; Parvin Razzaghi; Antti Poso; Massoud Amanlou; Jahan B. Ghasemi; Ali Masoudi-Nejad (Bioinform., 2020)

Incorporating part-whole hierarchies into fully convolutional network for scene parsing. - Karim Abbasi; Parvin Razzaghi (Expert Syst. Appl., 2020)

Learning spatial hierarchies of high-level features in deep neural network. - Parvin Razzaghi; Karim Abbasi; Pegah Bayat (J. Vis. Commun. Image Represent., 2020)

AutoDTI++: deep unsupervised learning for DTI prediction by autoencoders. - Seyedeh Zahra Sajadi; Mohammad Ali Zare Chahooki; Sajjad Gharaghani; Karim Abbasi (BMC Bioinform., 2021)

Modality adaptation in multimodal data. - Parvin Razzaghi; Karim Abbasi; Mahmoud Shirazi; Niloofar Shabani (Expert Syst. Appl., 2021)

Multimodal brain tumor detection using multimodal deep transfer learning. - Parvin Razzaghi; Karim Abbasi; Mahmoud Shirazi; Shima Rashidi (Appl. Soft Comput., 2022)

DeepTraSynergy: drug combinations using multimodal deep learning with transformers. - Fatemeh Rafiei; Hojjat Zeraati; Karim Abbasi; Jahan B. Ghasemi; Mahboubeh Parsaeian; Ali Masoudi-Nejad (Bioinform., 2023)

TripletMultiDTI: Multimodal representation learning in drug-target interaction prediction with triplet loss function. - Alireza Dehghan; Parvin Razzaghi; Karim Abbasi; Sajjad Gharaghani (Expert Syst. Appl., 2023)

CFSSynergy: Combining Feature-Based and Similarity-Based Methods for Drug Synergy Prediction. - Fatemeh Rafiei; Hojjat Zeraati; Karim Abbasi; Parvin Razzaghi; Jahan B. Ghasemi; Mahboubeh Parsaeian; Ali Masoudi-Nejad (J. Chem. Inf. Model., 2024)

CCL-DTI: contributing the contrastive loss in drug-target interaction prediction. - Alireza Dehghan; Karim Abbasi; Parvin Razzaghi; Hossein Banadkuki; Sajjad Gharaghani (BMC Bioinform., 2024)

DFT_ANPD: A dual-feature two-sided attention network for anticancer natural products detection. - Rambod Norouzi; Romina Norouzi; Karim Abbasi; Radin Norouzi; Parvin Razzaghi (Comput. Biol. Medicine, 2025)