Automating Molecular Docking with Explicit Receptor Flexibility Using Scientific Workflows. - Karina S. Machado; Evelyn K. Schroeder; Duncan D. Ruiz; Osmar Norberto de Souza (BSB, 2007)

Extracting Information from Flexible Receptor-Flexible Ligand Docking Experiments. - Karina S. Machado; Evelyn K. Schroeder; Duncan D. Ruiz; Ana Wink; Osmar Norberto de Souza (BSB, 2008)

FReDD: Supporting Mining Strategies through a Flexible-Receptor Docking Database. - Ana T. Winck; Karina S. Machado; Osmar Norberto de Souza; Duncan D. Ruiz (BSB, 2009)

Association Rules to Identify Receptor and Ligand Structures through Named Entities Recognition. - Ana T. Winck; Karina S. Machado; Duncan D. Ruiz; Vera Lúcia Strube de Lima (IEA/AIE (3), 2010)

Discretization of Flexible-Receptor Docking Data. - Karina S. Machado; Ana T. Winck; Duncan D. Ruiz; Osmar Norberto de Souza (BSB, 2010)

Mining flexible-receptor molecular docking data. - Karina S. Machado; Ana T. Winck; Duncan D. Ruiz; Osmar Norberto de Souza (WIREs Data Mining Knowl. Discov., 2011)

Seleção eficiente de conformações de receptor flexível em simulações de docagem molecular. - Karina dos Santos Machado (2011)

A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors. - Ana T. Winck; Christian Vahl Quevedo; Karina S. Machado; Osmar Norberto de Souza; Duncan D. Ruiz (BSB, 2012)

Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data. - Rodrigo C. Barros; Ana T. Winck; Karina S. Machado; Márcio P. Basgalupp; André Carlos Ponce de Leon Ferreira de Carvalho; Duncan D. Ruiz; Osmar Norberto de Souza (BMC Bioinform., 2012)

Multi-Agent-Based Simulation of Mycobacterium Tuberculosis Growth. - Pablo Werlang; Michel Q. Fagundes; Diana Francisca Adamatti; Karina S. Machado; Andrea von Groll; Pedro E. A. da Silva; Adriano Velasque Werhli (MABS, 2013)

A data warehouse as an infrastructure to mine molecular descriptors for virtual screening. - Giovanni Xavier Perazzo; Ana T. Winck; Karina S. Machado (SAC, 2013)

Parallel Algorithm for the HP Protein Folding Problem. - Matheus Machado dos Santos; Mauricio G. Goulart; Giovana J. Gelatti; Karina S. Machado; Adriano Velasque Werhli; Odorico Machado Mendizabal (WEIT, 2013)

Estimation of Parameters of Mycobacterium tuberculosis Growth: A Multi-Agent-Based Simulation Approach. - Pablo Werlang; Michel Q. Fagundes; Diana Francisca Adamatti; Karina Santos Machado; Andrea von Groll; Pedro E. A. da Silva; Adriano Velasque Werhli (IBERAMIA, 2014)

SIGNUM: tradutor Português-Libras baseado em mineração de texto como extensão para navegador web. - Giovana Jaskulski Gelatti; Vinícius Alves Cassales; André Prisco Vargas; Carla Imaraya de Felippe; Karina dos Santos Machado (IHC (Companion), 2014)

Inference of regulatory networks with a convergence improved MCMC sampler. - Nilzair M. Barreto; Karina S. Machado; Adriano Velasque Werhli (BMC Bioinform., 2015)

A framework for virtual screening. - Vinicius Rosa Seus; Lande Silva Jr.; Jorge Gomes; Pedro E. A. da Silva; Adriano Velasque Werhli; Karina S. Machado (SAC, 2016)

A methodology for selecting the most suitable cluster validation internal indices. - Caroline Tomasini; Leonardo R. Emmendorfer; Eduardo Nunes Borges; Karina S. Machado (SAC, 2016)

Deduplicação de Contatos em Dispositivos Móveis Utilizando Similaridade Textual e Aprendizado de Máquina [Contacts Deduplication in Mobile Devices Using Textual Similarity and Machine Learning]. - Rafael F. Machado; Rafael F. Pinheiro; Karina S. Machado; Eduardo N. Borges (SBSI, 2016)

An MCDM Approach to the Selection of Novel Technologies for Innovative In-Vehicle Information Systems. - Isabel C. Lisboa; Joana Vieira; Sandra M. Aluísio; Karina S. Machado; Nuno Ribeiro; Estêvão Silva; Rita A. Ribeiro; Alfredo F. Pereira (Int. J. Decis. Support Syst. Technol., 2016)

A Study on the Relationship between Internal and External Validity Indices Applied to Partitioning and Density-based Clustering Algorithms. - Caroline Tomasini; Eduardo Nunes Borges; Karina S. Machado; Leonardo R. Emmendorfer (ICEIS (1), 2017)

Inference of regulatory networks with MCMC sampler guided by mutual information. - Nilzair M. Barreto; Karina S. Machado; Adriano Velasque Werhli (SAC, 2017)

Text Messaging (SMS) Helping Cancer Care in Patients Undergoing Chemotherapy Treatment: a Pilot Study. - Timóteo Matthies Rico; Karina dos Santos Machado; Vanessa Pellegrini Fernandes; Samanta Winck Madruga; Patrícia Tuerlinckx Noguez; Camila Rose Guadalupe Barcelos; Mateus Madail Santin; Cristiane Rios Petrarca; Samuel Carvalho Dumith (J. Medical Syst., 2017)

Reducing Monitoring Overhead in Virtualized Environments Through Feature Selection. - Pedro Freire Popiolek; Karina S. Machado; Odorico M. Mendizabal (SBRC, 2018)

A comparison of classifiers for predicting the class color of fluorescent proteins. - Roger Sá da Silva; Luis Fernando Marins; Daniela Volcan Almeida; Karina dos Santos Machado; Adriano Velasque Werhli (Comput. Biol. Chem., 2019)

Use of Text Messaging (SMS) for the Management of Side Effects in Cancer Patients Undergoing Chemotherapy Treatment: a Randomized Controlled Trial. - Timóteo Matthies Rico; Karina dos Santos Machado; Vanessa Pellegrini Fernandes; Samanta Winck Madruga; Mateus Madail Santin; Cristiane Rios Petrarca; Samuel Carvalho Dumith (J. Medical Syst., 2020)

Ensemble of Protein Stability upon Point Mutation Predictors. - Eduardo Kenji Hasegawa de Freitas; Alex Dias Camargo; Maurício Dorneles Caldeira Balboni; Adriano Velasque Werhli; Karina dos Santos Machado (BRACIS (2), 2021)

KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions. - Maria Kadukova; Karina dos Santos Machado; Pablo Chacón; Sergei Grudinin (Bioinform., 2021)

Low overhead performance monitoring for shared infrastructures. - Pedro Freire Popiolek; Karina dos Santos Machado; Odorico Machado Mendizabal (Expert Syst. Appl., 2021)

Search for Zinc Complexes with High Affinity in Pyrazinamidase from Mycobacterium Tuberculosis Resistant to Pyrazinamide. - Jesus Alvarado-Huayhuaz; Daniel Alonso Talaverano-Rojas; Reneé Isabel Huamán Quispe; Maurício Dorneles Caldeira Balboni; Oscar Emilio Arrúa Arce; Adriano Velasque Werhli; Karina dos Santos Machado; Ana Cecilia Valderrama-Negrón (BSB, 2022)

A Non Exhaustive Search of Exhaustiveness. - Letícia Kristian Silva Cecotti; Maurício Dorneles Caldeira Balboni; Oscar Emilio Arrúa Arce; Karina dos Santos Machado; Adriano Velasque Werhli (BSB, 2022)

Feature Selection Investigation in Machine Learning Docking Scoring Functions. - Maurício Dorneles Caldeira Balboni; Oscar Emilio Arrúa Arce; Adriano Velasque Werhli; Karina dos Santos Machado (BSB, 2023)

Artificial Neural Networks for the Rapid Prediction of Possible Ferroptosis Inducers Using the GPx4 Enzyme. - Jesus Antonio Alvarado-Huayhuaz; Miquéias Amorim Santos Silva; Elvis Mauricio Jimenez Peña; Joel Claudio Rengifo Maraví; Angella M. Cordova-Muñoz; Karina dos Santos Machado (CIBCB, 2024)

RFL-Score: Random Forest with Lasso Scoring Function for Protein-Ligand Molecular Docking. - Oscar Emilio Arrúa Arce; Andrej Aderhold; Adriano Velasque Werhli; Karina dos Santos Machado (CIBCB, 2024)

CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13. - Oleksandra Herasymenko; Madhushika Silva; Abd Al-Aziz A. Abu-Saleh; Ayaz Ahmad; Jesus Alvarado-Huayhuaz; Oscar Emilio Arrúa Arce; Roly J. Armstrong; Cheryl H. Arrowsmith; Kelly E. Bachta; Hartmut Beck; Dénes Berta; Mateusz K. Bieniek; et al. (J. Chem. Inf. Model., 2025)

AquaFeat: A Features-Based Image Enhancement Model for Underwater Object Detection. - Emanuel C. Silva; Tatiana Taís Schein; Stephanie Loi Brião; Guilherme L. M. Costa; Felipe G. Oliveira; Gustavo Pereira de Almeida; Eduardo L. Silva; Sam S. Devincenzi; Karina S. Machado; Paulo L. J. Drews-Jr (CoRR, 2025)