Systems biology and malaria. - Elizabeth A. Winzeler; Karine G. Le Roch; Yingyao Zhou; Peter L. Blair; Muni Grainger; J. Kathleen Moch; J. David Haynes; Patricia De la Vega; Anthony A. Holder; Serge Batalov; Daniel J. Carucci (RECOMB, 2004)

BRAT: bisulfite-treated reads analysis tool. - Elena Yavorska Harris; Nadia Ponts; Aleksandr Levchuk; Karine G. Le Roch; Stefano Lonardi (Bioinform., 2010)

Exploratory analysis of genomic segmentations with Segtools. - Orion J. Buske; Michael M. Hoffman; Nadia Ponts; Karine G. Le Roch; William Stafford Noble (BMC Bioinform., 2011)

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads. - Elena Yavorska Harris; Nadia Ponts; Karine G. Le Roch; Stefano Lonardi (Bioinform., 2012)

NOrMAL: accurate nucleosome positioning using a modified Gaussian mixture model. - Anton Polishko; Nadia Ponts; Karine G. Le Roch; Stefano Lonardi (Bioinform., 2012)

PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads. - Anton Polishko; Evelien M. Bunnik; Karine G. Le Roch; Stefano Lonardi (BMC Bioinform., 2014)

ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks. - Anton Polishko; Md. Abid Hasan; Weihua Pan; Evelien M. Bunnik; Karine G. Le Roch; Stefano Lonardi (WABI, 2017)

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features. - David F. Read; Kate Cook; Yang Young Lu; Karine G. Le Roch; William Stafford Noble (PLoS Comput. Biol., 2019)

Design and tests of prospective property predictions for novel antimalarial 2-aminopropylaminoquinolones. - Robert D. Clark; Denise N. Morris; Gary Chinigo; Michael S. Lawless; Jacques Prudhomme; Karine G. Le Roch; Maria José Lafuente; Santiago Ferrer; Francisco Javier Gamo; Robert Gadwood; Walter S. Woltosz (J. Comput. Aided Mol. Des., 2020)