Approaches to optical neuromodulation from rodents to non-human primates by integrated optoelectronic devices. - Jing Wang; Ilker Ozden; Mohamed Diagne; Fabien B. Wagner; David A. Borton; Benjamin Brush; Naubahar Agha; Rebecca Burwell; David Sheinberg; Ilka Diester; Karl Deisseroth; Arto V. Nurmikko (EMBC, 2011)

An Implantable Optical Stimulation Delivery System for Actuating an Excitable Biosubstrate. - Kunal Paralikar; Peng Cong; Ofer Yizhar; Lief Ericsson Fenno; Wesley Santa; Chris Nielsen; David Dinsmoor; Bob Hocken; Gordon Munns; Jon Giftakis; Karl Deisseroth; Timothy Denison (IEEE J. Solid State Circuits, 2011)

Neuronal filtering of multiplexed odour representations. - Francisca Blumhagen; Peixin Zhu; Jennifer Shum; Yan-Ping Zhang Schärer; Emre Yaksi; Karl Deisseroth; Rainer W. Friedrich (Nat., 2011)

Challenges and Opportunities for Next-Generation Intracortically Based Neural Prostheses. - Vikash Gilja; Cindy A. Chestek; Ilka Diester; Jaimie M. Henderson; Karl Deisseroth; Krishna V. Shenoy (IEEE Trans. Biomed. Eng., 2011)

The open connectome project data cluster: scalable analysis and vision for high-throughput neuroscience. - Randal C. Burns; Kunal Lillaney; Daniel R. Berger; Logan Grosenick; Karl Deisseroth; R. Clay Reid; William R. Gray Roncal; Priya Manavalan; Davi Bock; Narayanan Kasthuri; Michael M. Kazhdan; Stephen J. Smith; et al. (SSDBM, 2013)

Human pluripotent stem cell tools for cardiac optogenetics. - Yan Zhuge; Bhagat Patlolla; Charu Ramakrishnan; Ramin E. Beygui; Christopher K. Zarins; Karl Deisseroth; Ellen Kuhl; Oscar J. Abilez (EMBC, 2014)

A Diffeomorphic Approach to Multimodal Registration with Mutual Information: Applications to CLARITY Mouse Brain Images. - Kwame S. Kutten; Nicolas Charon; Michael I. Miller; J. Tilak Ratnanather; Karl Deisseroth; Li Ye; Joshua T. Vogelstein (CoRR, 2016)

Deformably Registering and Annotating Whole CLARITY Brains to an Atlas via Masked LDDMM. - Kwame S. Kutten; Joshua T. Vogelstein; Nicolas Charon; Li Ye; Karl Deisseroth; Michael I. Miller (CoRR, 2016)

Keynote speakers: Nature's gift: How the discovery of structural principles in a microbial protein helped illuminate the pathophysiology of psychiatry. - Karl Deisseroth (ICCP, 2017)

A Large Deformation Diffeomorphic Approach to Registration of CLARITY Images via Mutual Information. - Kwame S. Kutten; Nicolas Charon; Michael I. Miller; J. Tilak Ratnanather; Jordan Matelsky; Alexander D. Baden; Kunal Lillaney; Karl Deisseroth; Li Ye; Joshua T. Vogelstein (MICCAI (1), 2017)

The separate effects of lipids and proteins on brain MRI contrast revealed through tissue clearing. - Christoph Leuze; Markus Aswendt; Emily Ferenczi; Corey W. Liu; Brian Hsueh; Maged Goubran; Qiyuan Tian; Gary Steinberg; Michael M. Zeineh; Karl Deisseroth; Jennifer A. McNab (NeuroImage, 2017)

Multimodal characterization of the human nucleus accumbens. - Samuel CD. Cartmell; Qiyuan Tian; Brandon J. Thio; Christoph Leuze; Li Ye; Nolan R. Williams; Grant Yang; Gabriel Ben-Dor; Karl Deisseroth; Warren M. Grill 001; Jennifer A. McNab; Casey H. Halpern (NeuroImage, 2019)

Comparison of diffusion MRI and CLARITY fiber orientation estimates in both gray and white matter regions of human and primate brain. - Christoph Leuze; Maged Goubran; Muhamed Barakovic; Markus Aswendt; Qiyuan Tian; Brian Hsueh; A. Crow; E. M. M. Weber; Gary Steinberg; Michael Zeineh; E. D. Plowey; Alessandro Daducci; et al. (NeuroImage, 2021)

BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes. - Thomas L. Athey; Matthew A. Wright; Marija Pavlovic; Vikram Chandrashekhar; Karl Deisseroth; Michael I. Miller; Joshua T. Vogelstein (Neuroinformatics, 2023)

POCO: Scalable Neural Forecasting through Population Conditioning. - Yu Duan; Hamza Tahir Chaudhry; Misha B. Ahrens; Christopher D. Harvey; Matthew G. Perich; Karl Deisseroth; Kanaka Rajan (CoRR, 2025)