Optimization algorithms for functional deimmunization of therapeutic proteins. - Andrew S. Parker; Wei Zheng 009; Karl E. Griswold; Chris Bailey-Kellogg (BMC Bioinform., 2010)

Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination. - Wei Zheng 009; Karl E. Griswold; Chris Bailey-Kellogg (J. Comput. Biol., 2010)

Optimization of Therapeutic proteins to Delete T-Cell epitopes while Maintaining Beneficial Residue Interactions. - Andrew S. Parker; Karl E. Griswold; Chris Bailey-Kellogg (J. Bioinform. Comput. Biol., 2011)

Optimization of Combinatorial Mutagenesis. - Andrew S. Parker; Karl E. Griswold; Chris Bailey-Kellogg (J. Comput. Biol., 2011)

Structure-Guided Deimmunization of Therapeutic Proteins. - Andrew S. Parker; Karl E. Griswold; Chris Bailey-Kellogg (RECOMB, 2012)

Structure-Guided Deimmunization of Therapeutic Proteins. - Andrew S. Parker; Yoonjoo Choi; Karl E. Griswold; Chris Bailey-Kellogg (J. Comput. Biol., 2013)

Structure-based redesign of proteins for minimal T-cell epitope content. - Yoonjoo Choi; Karl E. Griswold; Chris Bailey-Kellogg (J. Comput. Chem., 2013)

Mapping the Pareto Optimal Design Space for a Functionally Deimmunized Biotherapeutic Candidate. - Regina S. Salvat; Andrew S. Parker; Yoonjoo Choi; Chris Bailey-Kellogg; Karl E. Griswold (PLoS Comput. Biol., 2015)

A Feasibility Study of Nonlinear Spectroscopic Measurement of Magnetic Nanoparticles Targeted to Cancer Cells. - Bradley W. Ficko; Christian NDong; Paolo Giacometti; Karl E. Griswold; Solomon Gilbert Diamond (IEEE Trans. Biomed. Eng., 2017)

DisruPPI: structure-based computational redesign algorithm for protein binding disruption. - Yoonjoo Choi; Jacob M. Furlon; Ryan B. Amos; Karl E. Griswold; Chris Bailey-Kellogg (Bioinform., 2018)

Computer-guided binding mode identification and affinity improvement of an LRR protein binder without structure determination. - Yoonjoo Choi; Sukyo Jeong; Jung-Min Choi; Christian NDong; Karl E. Griswold; Chris Bailey-Kellogg; Hak-Sung Kim (PLoS Comput. Biol., 2020)

Building blocks and blueprints for bacterial autolysins. - Spencer J. Mitchell; Deeptak Verma; Karl E. Griswold; Chris Bailey-Kellogg (PLoS Comput. Biol., 2021)