PigGIS: Pig Genomic Informatics System. - Jue Ruan; Yiran Guo; Heng Li 002; Yafeng Hu; Fei Song; Xin Huang; Karsten Kristiansen; Lars Bolund; Jun Wang 004 (Nucleic Acids Res., 2007)

FGF: A web tool for Fishing Gene Family in a whole genome database. - Hongkun Zheng; Junjie Shi; Xiaodong Fang; Yuan Li; Søren Vang; Wei Fan; Junyi Wang; Zhang Zhang 002; Wen Wang; Karsten Kristiansen; Jun Wang 004 (Nucleic Acids Res., 2007)

SOAP: short oligonucleotide alignment program. - Ruiqiang Li; Yingrui Li; Karsten Kristiansen; Jun Wang 004 (Bioinform., 2008)

TreeFam: 2008 Update. - Jue Ruan; Heng Li 002; Zhongzhong Chen; Avril Coghlan; Lachlan James M. Coin; Yiran Guo; Jean-Karim Hériché; Yafeng Hu; Karsten Kristiansen; Ruiqiang Li; Tao Liu; Alan Moses; et al. (Nucleic Acids Res., 2008)

SOAP2: an improved ultrafast tool for short read alignment. - Ruiqiang Li; Chang Yu; Yingrui Li; Tak Wah Lam; Siu-Ming Yiu; Karsten Kristiansen; Jun Wang 004 (Bioinform., 2009)

Pharmacophore-driven identification of PPARγ agonists from natural sources. - Rasmus K. Petersen; Kathrine B. Christensen; Andreana N. Assimopoulou; Xavier Fretté; Vassilios P. Papageorgiou; Karsten Kristiansen; Irene Kouskoumvekaki (J. Comput. Aided Mol. Des., 2011)

Discovery of a Novel Selective PPARγ Ligand with Partial Agonist Binding Properties by Integrated in Silico/in Vitro Work Flow. - Irene Kouskoumvekaki; Rasmus K. Petersen; Filip Fratev; Olivier Taboureau; Thomas E. Nielsen; Tudor I. Oprea; Si B. Sonne; Esben N. Flindt; Svava Ósk Jónsdóttir; Karsten Kristiansen (J. Chem. Inf. Model., 2013)

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. - Kristoffer Forslund; Falk Hildebrand; Trine Nielsen; Gwen Falony; Emmanuelle Le Chatelier; Shinichi Sunagawa; Edi Prifti; Sara Vieira-Silva; Valborg Gudmundsdottir; Helle Krogh Pedersen; Manimozhiyan Arumugam; Karsten Kristiansen; et al. (Nat., 2015)

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. - Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; Jette Bork-Jensen; et al. (Nat., 2017)

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. - Maria Luisa Matey-Hernandez; Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; et al. (BMC Bioinform., 2018)

The FASTQ+ format and PISA. - Quan Shi; Shiping Liu; Karsten Kristiansen; Longqi Liu (Bioinform., 2022)

Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes. - Zhuye Jie; Chen Chen; Lilan Hao; Fei Li; Liju Song; Xiaowei Zhang; Jie Zhu; Liu Tian; Xin Tong; Kaiye Cai; Zhe Zhang; Yanmei Ju; et al. (Genom. Proteom. Bioinform., 2022)

Over 50, 000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa. - Jie Zhu; Liu Tian; Peishan Chen; Mo Han; Liju Song; Xin Tong; Xiaohuan Sun; Fangming Yang; Zhipeng Lin; Xing Liu; Chuan Liu; Xiaohan Wang; et al. (Genom. Proteom. Bioinform., 2022)