MeltDB: a software platform for the analysis and integration of metabolomics experiment data. - Heiko Neuweger; Stefan P. Albaum; Michael Dondrup; Marcus Persicke; Tony Watt; Karsten Niehaus; Jens Stoye; Alexander Goesmann (Bioinform., 2008)

TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. - Naryttza N. Diaz; Lutz Krause; Alexander Goesmann; Karsten Niehaus; Tim W. Nattkemper (BMC Bioinform., 2009)

A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages. - Christian Loyek; Jan Kölling; Daniel Langenkämper; Karsten Niehaus; Tim W. Nattkemper (IDA, 2011)

Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. - Nils Hoffmann; Matthias Keck; Heiko Neuweger; Mathias Wilhelm 001; Petra Högy; Karsten Niehaus; Jens Stoye (BMC Bioinform., 2012)

MeltDB 2.0-advances of the metabolomics software system. - Nikolas Kessler; Heiko Neuweger; Anja Bonte; Georg Langenkämper; Karsten Niehaus; Tim W. Nattkemper; Alexander Goesmann (Bioinform., 2013)

BiPACE 2D - graph-based multiple alignment for comprehensive 2D gas chromatography-mass spectrometry. - Nils Hoffmann; Mathias Wilhelm 001; Anja Doebbe; Karsten Niehaus; Jens Stoye (Bioinform., 2014)

Detection and visualization of communities in mass spectrometry imaging data. - Karsten Wüllems; Jan Kölling; Hanna Bednarz; Karsten Niehaus; Volkmar H. Hans; Tim W. Nattkemper (BMC Bioinform., 2019)

MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. - Konstantinos Tzanakis; Tim W. Nattkemper; Karsten Niehaus; Stefan P. Albaum (BMC Bioinform., 2022)