Automatic glaucoma assessment from angio-OCT images. - Karthik Gopinath; Jayanthi Sivaswamy; Tarannum Mansoori (ISBI, 2016)

Domain knowledge assisted cyst segmentation in OCT retinal images. - Karthik Gopinath; Jayanthi Sivaswamy (CoRR, 2016)

A Deep Learning Framework for Segmentation of Retinal Layers from OCT Images. - Karthik Gopinath; Samrudhdhi B. Rangrej; Jayanthi Sivaswamy (ACPR, 2017)

A Generalized Motion Pattern and FCN based approach for retinal fluid detection and segmentation. - Shivin Yadav; Karthik Gopinath; Jayanthi Sivaswamy (CoRR, 2017)

Graph Convolutions on Spectral Embeddings: Learning of Cortical Surface Data. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (CoRR, 2018)

Adaptive Graph Convolution Pooling for Brain Surface Analysis. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (IPMI, 2019)

Learnable Pooling in Graph Convolution Networks for Brain Surface Analysis. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (CoRR, 2019)

Graph Convolutions on Spectral Embeddings for Cortical Surface Parcellation. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (Medical Image Anal., 2019)

Segmentation of Retinal Cysts From Optical Coherence Tomography Volumes Via Selective Enhancement. - Karthik Gopinath; Jayanthi Sivaswamy (IEEE J. Biomed. Health Informatics, 2019)

RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge. - Hrvoje Bogunovic; Freerk G. Venhuizen; Sophie Klimscha; Stefanos Apostolopoulos; Alireza Bab-Hadiashar; Ulas Bagci; Mirza Faisal Beg; Loza Bekalo; Qiang Chen 004; Carlos Ciller; Karthik Gopinath; Amirali K. Gostar; et al. (IEEE Trans. Medical Imaging, 2019)

HyperDense-Net: A Hyper-Densely Connected CNN for Multi-Modal Image Segmentation. - Jose Dolz; Karthik Gopinath; Jing Yuan 001; Herve Lombaert; Christian Desrosiers; Ismail Ben Ayed (IEEE Trans. Medical Imaging, 2019)

Spectral Graph Transformer Networks for Brain Surface Parcellation. - Ran He; Karthik Gopinath; Christian Desrosiers; Herve Lombaert (ISBI, 2020)

Graph Domain Adaptation for Alignment-Invariant Brain Surface Segmentation. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (UNSURE/GRAIL@MICCAI, 2020)

SegRecon: Learning Joint Brain Surface Reconstruction and Segmentation from Images. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (MICCAI (7), 2021)

Learnable Pooling in Graph Convolutional Networks for Brain Surface Analysis. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (IEEE Trans. Pattern Anal. Mach. Intell., 2022)

Cortical Analysis of Heterogeneous Clinical Brain MRI Scans for Large-Scale Neuroimaging Studies. - Karthik Gopinath; Douglas N. Greve; Sudeshna Das 001; Steven E. Arnold; Colin G. Magdamo; Juan Eugenio Iglesias (MICCAI (8), 2023)

Learning joint surface reconstruction and segmentation, from brain images to cortical surface parcellation. - Karthik Gopinath; Christian Desrosiers; Herve Lombaert (Medical Image Anal., 2023)

Pseudo-rendering for Resolution and Topology-Invariant Cortical Parcellation. - Pablo Blasco Fernandez; Karthik Gopinath; John Williams-Ramirez; Rogeny Herisse; Lucas J. Deden-Binder; Dina Zemlyanker; Theressa Connors; Liana Kozanno; Derek H. Oakley; Bradley T. Hyman; Sean I. Young; Juan Eugenio Iglesias (MLMI@MICCAI (2), 2024)

Registration by Regression (RbR): A Framework for Interpretable and Flexible Atlas Registration. - Karthik Gopinath; Xiaoling Hu 002; Malte Hoffmann; Oula Puonti; Juan Eugenio Iglesias (WBIR, 2024)

Hierarchical Uncertainty Estimation for Learning-based Registration in Neuroimaging. - Xiaoling Hu 002; Karthik Gopinath; Peirong Liu; Malte Hoffmann; Koen Van Leemput; Oula Puonti; Juan Eugenio Iglesias (ICLR, 2025)

"Recon-all-clinical": Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI. - Karthik Gopinath; Douglas N. Greve; Colin G. Magdamo; Steven E. Arnold; Sudeshna Das 001; Oula Puonti; Juan Eugenio Iglesias (Medical Image Anal., 2025)

From Low Field to High Value: Robust Cortical Mapping from Low-Field MRI. - Karthik Gopinath; Annabel Sorby-Adams; Jonathan Williams Ramirez; Dina Zemlyanker; Jennifer Guo; David Hunt; Christine L. Mac Donald; C. Dirk Keene; Timothy S. Coalson; Matthew F. Glasser; David C. Van Essen; Matthew S. Rosen; et al. (CoRR, 2025)

End-to-end Cortical Surface Reconstruction from Clinical Magnetic Resonance Images. - Jesper Duemose Nielsen; Karthik Gopinath; Andrew Hoopes; Adrian V. Dalca; Colin G. Magdamo; Steven E. Arnold; Sudeshna Das 001; Axel Thielscher; Juan Eugenio Iglesias; Oula Puonti (CoRR, 2025)

UNSURF: Uncertainty Quantification for Cortical Surface Reconstruction of Clinical Brain MRIs. - Raghav Mehta; Karthik Gopinath; Ben Glocker; Juan Eugenio Iglesias (CoRR, 2025)

Automated Segmentation of Coronal Brain Tissue Slabs for 3D Neuropathology. - Jonathan Williams Ramirez; Dina Zemlyanker; Lucas J. Deden-Binder; Rogeny Herisse; Erendira Garcia Pallares; Karthik Gopinath; Harshvardhan Gazula; Christopher Mount; Liana Kozanno; Michael S. Marshall; Theresa R. Connors; Matthew P. Frosch; et al. (CoRR, 2025)