Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-Tubercular Drugs. - Karthik Raman 002; Preethi Rajagopalan; Nagasuma R. Chandra (PLoS Comput. Biol., 2005)

targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis. - Karthik Raman 002; Kalidas Yeturu; Nagasuma R. Chandra (BMC Syst. Biol., 2008)

Flux balance analysis of biological systems: applications and challenges. - Karthik Raman 002; Nagasuma R. Chandra (Briefings Bioinform., 2009)

Identification of putative and potential cross-reactive chickpea (Cicer arietinum) allergens through an in silico approach. - Anuja Kulkarni; Laxmi Ananthanarayan; Karthik Raman 002 (Comput. Biol. Chem., 2013)

Critical assessment of genome-scale metabolic networks: the need for a unified standard. - Aarthi Ravikrishnan; Karthik Raman 002 (Briefings Bioinform., 2015)

Fast-SL: an efficient algorithm to identify synthetic lethal sets in metabolic networks. - Aditya Pratapa; Shankar Balachandran; Karthik Raman 002 (Bioinform., 2015)

Schema-Agnostic Indexing with Azure DocumentDB. - Dharma Shukla; Shireesh Thota; Karthik Raman 002; Madhan Gajendran; Ankur Shah; Sergii Ziuzin; Krishnan Sundaram; Miguel Gonzalez Guajardo; Anna Wawrzyniak; Samer Boshra; Renato Ferreira; Mohamed Nassar 002; et al. (Proc. VLDB Endow., 2015)

Predicting novel metabolic pathways through subgraph mining. - Aravind Sankar; Sayan Ranu; Karthik Raman 002 (Bioinform., 2017)

Understanding the evolution of functional redundancy in metabolic networks. - Gayathri Sambamoorthy; Karthik Raman 002 (Bioinform., 2018)

MinReact: a systematic approach for identifying minimal metabolic networks. - Gayathri Sambamoorthy; Karthik Raman 002 (Bioinform., 2020)

Goal directed molecule generation using Monte Carlo Tree Search. - Anand A. Rajasekar; Karthik Raman 002; Balaraman Ravindran (CoRR, 2020)

Discovering adaptation-capable biological network structures using control-theoretic approaches. - Priyan Bhattacharya; Karthik Raman 002; Arun K. Tangirala (PLoS Comput. Biol., 2022)