Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. - Kaspar Valgepea; Kaarel Adamberg; Ranno Nahku; Petri-Jaan Lahtvee; Liisa Arike; Raivo Vilu (BMC Syst. Biol., 2010)

Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wasting. - Kaspar Valgepea; Kaarel Adamberg; Raivo Vilu (BMC Syst. Biol., 2011)

Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways. - Jon Pey; Kaspar Valgepea; Angel Rubio; John E. Beasley; Francisco J. Planes (BMC Syst. Biol., 2013)